2018

mercredi 17 octobre 2018

Les publications illustrent les collaborations scientifiques au sein de la FR BioEnviS.
Elles sont portées par au moins 2 unités de la FR et/ou ont bénéficié des services des plateformes de celle-ci.

Alonso L., Creuzé-des-Châtelliers C., Trabac T., Dubost A., Moënne-Loccoz Y. and Pommier T. Rock substrate rather than black stain alterations drives microbial community structure in the passage of Lascaux Cave. Microbiome, 6 : 216.

Ashraf U., Benoit-Pilven C., Lacroix V., Navratil V. and Naffakh N. Advances in Analyzing Virus-Induced Alterations of Host Cell Splicing. Trends Microbiol., 27(3):268-281.

Bardon C., Misery B., Simon L., Piola F., Poly F. and Le Roux X. Biological control of soil N cycle processes related to nitrate availability by P. aquilinum and E. cinerea in Atlantic heathlands along a pH gradient. Ecosphere, 9 : e02426.

Bardon C., Miser, B., Piola F., Poly F. and Le Roux X. Control of soil N cycle processes by Pteridium aquilinum and Erica cinerea in heathlands along a pH gradient. Ecosphere, 9 : 01-14.

Barrillot B., Roux J., Arthaud S., Averty L., Clair A., Herrel A. and Libourel PA. Intramuscular administration of ketamine-medetomidine assures stable anaesthesia needed for long-term surgery in the argentine tegu Salvator merianae. Journal of Zoo and Wildlife, 49(2):291-296.

Bastian F., Jacot-des-Combes C., Hänni C. and Perrier M. Determination of the geographical origin of leather shields from Zanzibar using ancient DNA tools. J Archaeological Sciences, 19 : 323-333.

Bouffaud M.L., Renoud S., Dubost A., Moënne-Loccoz Y. and Muller D. 1-Aminocyclopropane-1-carboxylate deaminase producers associated to maize and other Poaceae species. Microbiome, 6 : 114.

Bodilis J., Denet E., Brothier E., Graindorge A., Favre-Bonté S. and Nazaret S. Comparative Genomics of Environmental and Clinical Burkholderia cenocepacia Strains Closely Related to the Highly Transmissible Epidemic ET12 Lineage. Front Microbiol., 9:383.

Chonova T., Lecomte V., Bertrand-Krajewski J.-L., Dagot C., Lévi Y., Perrodin Y., Labanowski J., Wiest L., Gonzalez-Ospina A., Bouchez A., Cournoyer B. and Sebastian C. The SIPIBEL project : treatment of hospital and urban wastewater in a conventional urban wastewater treatment plant. Env. Sc. Poll. Res., 25 : 9197-9206.

Colella S. , Parisot N., Simonet P., Gaget K., Duport G. and Baa-Puyoulet P. Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum. Frontiers in physiology, 9, 1498.

Dav√in AA., Tannier E., Williams TA., Boussau B., Daubin V. and Szollosi GJ. Gene transfers can date the Tree of Life. Nat Ecol Evol., 2(5) : 904-909.

Denet E., Vasselon V., Burdin B., Nazaret S. and Favre-Bonté S. Survival and growth of Stenotrophomonas maltophilia in free-living amoebae (FLA) and bacterial virulence properties. PLoS One, 13(2) : e0192308.

Destoumieux-Garzon D., Mavingui P., Boetsch G., Boissier J., Darriet F., Duboz P., Fritsch C., Giraudoux P., Le Roux F., Morand S., Paillard C., Pontier D., Sueur C. and Voituron Y. The One Health Concept : 10 Years Old and a Long Road Ahead. Frontiers in Veterinary Science, 5(14) : 1-10.

Eyenga P., Roussel D., Morel J., Rey B., Romestaing C., Gueguen-Chaignon V., Shey-Shing S. and Viale J.P. Time course of liver mitochondrial function and intrinsic changes in oxidative phosphorylation in a rat model of sepsis. Intensive Care Medicine Experimental, 6(31) : 1-17.

Galvao F.M., Mucha S.G., Parrot D., Meiffrein G., Ruggiero B.J.F., Comte G., Zaha A. and Sagot M.-F. Hydrogen peroxide production and myo-inositol metabolism as important traits for virulence of Mycoplasma hyopneumoniae. Molecular Microbiology, 108:683-696.

Griesmann M., Chang Y., Liu X., Spannagl M., Crook M.B., Billault-Penneteau B., Lauressergues D., Imanishi L., Kohlen W., Haberer G., Pujic P., Song Y., Battenberg K., Alloisio N., Liang Y., Ane C., Hilhorst H., Guedes Salgado M., Hocher V., Gherbi H., Svistoonoff S., He S., Xu Y., Xu S., Qu J., Normand P., Berry A.M., Wall L.G., Ane J.M., Pawlowski K., Xu X., Yang H., Mayer K.F.X., Wong G.K.S., Parniske M., Delaux P.M. and Cheng S. Phylogenomics reveals multiple losses of the nitrogen-fixing root nodule symbiosis. Science, 361(6398)

Guèguen L. and Duret L. Unbiased Estimate of Synonymous and Nonsynonymous Substitution Rates with Nonstationary Base Composition. Mol Biol Evol., 35(3) : 734-742.

Guio L., Vieira C. and Gonzales J. Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster. Scientific reports, 8 : 12197.

Guyonnet JP., Cantarel A., Simon L. and Haichar F.Z. Root exudation rate as a functional trait involved in plant nutrient-use strategy classification. Ecology and Evolution, 8 : 8571-8581.

Guyonnet JP., Guillemet M., Dubost A., Simon L., Ortet P., Barrakat M., Heulin T., Achouak W. and Haichar F.Z. Plant nutrient resource use strategies shape active rhizosphere microbiota through root exudation. Frontiers in Plant Science, 9:1662.

Hugoni M., Luis P., Guyonnet J.P. and Haichar F.Z. Plant host habitat and root exudates shape fungal diversity. Mycorrhiza, « Special issue Mycorrhizal Microbiomes », 1-13.

Jacquemond I., Muggeo A., Lamblin G., Tristan A., Gillet Y., Bolze P.A., Bes M., Gustave C.A., Rasigade J.-P., Golfier F., Ferry T., Dubost A., Abrouk D., Barreto S., Prigent-Combaret C., Thioulouse J., Lina G. and Muller D. Complex ecological interactions of Staphylococcus aureus in tampons during menstruation. Scientific Reports, 88 :9942.

Kerambrun E., Delahaut L., Geffard A. and David E. Differentiation of sympatric zebra and quagga mussels in ecotoxicological studies : A comparison of morphometric data, gene expression, and body metal concentrations. Ecotoxicology and environmental safety, 154 : 321-328. …

Kremer N., Koch EJ., El Filali A., Zhou L., Heath-Heckman EAC., Ruby EG. and McFall-Ngai MJ. Persistent Interactions with Bacterial Symbionts Direct Mature-Host Cell Morphology and Gene Expression in the Squid-Vibrio Symbiosis. mSystems, 3(5) : e00165-18.

Lurthy T., Alloisio N., Fournier P., Anchisi S., Ponsero A., Normand P., Pujc P. and Boubakri H. Molecular response to nitrogen starvation by Frankia alni ACN14a revealed by transcriptomics and functional analysis with a fosmid library in Escherichia coli. Research in Microbiology, 169 : 90-100.

Lecomte V., Bertrand-Krajewski J.L., Bouchez A., Cournoyer B., Dagot C., Gonzalez-Ospina A., Labanowski J., Levi Y., Perrodin Y. and Wiest L. SIPIBEL : a pilot site for studying hospital and urban sewage. Key lessons from five years of monitoring and research. Environ. Risques Santé, 17:59-74.

Libourel P.A., Barrillot B., Arthaud S., Massot B., Morel A.L., Beuf O. and Herrel A. Partial homologies between sleep states in lizards, mammals, and birds suggest a complex evolution of sleep states in amniotes. PLoS biology, 16 (10), e2005982.

Louchart A., Bastian F., Baptista M., Guarino-Vignon P., Hume J., Jacot-des-Combes C., Mourer-Chauviré C., Hänni C. and Ollivier M. Ancient DNA reveals the origins, colonisation histories and evolutionary pathways of two recently extinct species of large scops owl from Mauritius and Rodrigues Islands. J Biogeography, 45 : 2678-2689.

Mahamoud Ahmed A., Lyautey E.,Bonnineau C., Dabrin A. and Pesce S. Environmental Concentrations of Copper, Alone or in Mixture With Arsenic, Can Impact River Sediment Microbial Community Structure and Functions. Frontiers Microbiol, 9:1852.

Maire J., Vincent-Monégat C., Masson F., Zaidman-Rémy A. and Heddi A. An IMD-like pathway mediates both endosymbiont control and host immunity in the cereal weevil Sitophilus spp. Microbiome, 6(1):6.

Manin A., Ollivier M., Bastian F., Tombret O., Equihua Manrique JC. and Lefèvre C. Identifying the Mexican hairless dog in the archaeological record : morphological and genetic insights from Tizayuca, Basin of Mexico. J Archaeological Sciences, 98 : 128–136.

Mermillod-Blondin F., Voisin J., Marjolet L., Marmonier P. and Cournoyer B. Clay beads as artificial trapping substrates for monitoring bacterial distribution among urban stormwater infiltration systems and their connected aquifers. Env. Monitoring Assess., 191:58.

Meyer T., Renoud S., Vigouroux A., Miomandre A., Gaillard V., Kerzaon I., Prigent-Combaret C., Comte G., Moréra S., Vial L. and Lavire C. Regulation of hydroxycinnamic acid degradation drives Agrobacterium fabrum lifestyles. Mol. Plant-Microbe Interact., 31:814-822.

Meyer T., Vigouroux A., Aumont-Nicaise M., Comte G., Vial L., Lavire C. and Moréra S. The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogen Agrobacterium fabrum. J. Biol. Chem., 293:7930–7941.

Muyle A., Zemp N., Fruchard C., Cegan R., Vrana J., Deschamps C., Tavares R., Hobza R., Picard F., Widmer A. and Marais G. Genomic imprinting mediates dosage compensation in a young plant XY system. Nat Plants, 9:677-680.

Nonfoux L., Chiaruzzi M., Badiou C., Baude J., Tristan A., Thioulouse J., Muller D., Prigent Combaret C. and Lina G. Impact of currently marketed tampons and menstrual cups on Staphylococcus aureus growth and TSST-1 production in vitro. Applied and Environmental Microbiology, 84:e00351-18.

Normand P., Nouioui I., Pujic P., Fournier P., Dubost A., Schwob G., Klenk H.P., Nguyen A., Abrouk D., Herrera-Belaroussi A., Pothier J., Pflüger V. and Fernandez M.P. Frankia canadensis sp. nov., isolated from root nodules of Alnus incana ssp rugosa. IJSEM, 68 : 3001-3011.

Palau-Daval N., Gardette V. and Joly P. Age, courtship and senescence : sexual ornaments are larger in older great crested newts. Journal of Zoology, 306 : 156-162.

Pozzi A., Bautista-Guerrero H.H., Abby S.S., Herrera-Belaroussi A., Abrouk D., Normand P., Valdes M. and Fernandez M.P. Robust Frankia phylogeny, species delineation and intraspecies diversity based on Multi-Locus Sequence Analysis (MLSA) and Single-Locus Strain Typing (SLST) adapted to a large sample size. Syst Appl Microbiol., 41:311-323.

Pozzi A., Roy M., Nagati M., Schwob G., Manzi S., Gardes M., Moreau P.A. and Fernandez M.P. Patterns of diversity, endemism and specialization in the root symbiont communities of alder species on the island of Corsica. New Phytol., 1 : 336-349.

Raymond O., Gouzy J., Just J., Badouin H., Verdenaud M., Lemainque A., Vergne P., Moja S., Choisne N., Pont C., et al. The Rosa genome provides new insights into the domestication of modern roses. Nature Genetics, 50:772.

Rey C., Guéguen L., Sémon M. and Boussau B. Accurate Detection of Convergent Amino-Acid Evolution with PCOC. Mol Biol Evol., 35(9) : 2296-2306.

Rouifed S., Puijalon S., Bardon C., Meiffren G., Buonomo A., Sebei N., Poussineau S., Vallier F., Shimoda M. and Piola F. Comparison of defence and performance traits between one widespread clone and native populations in a major invasive plant species. Diversity and Distributions, 24:297–312.

Roussel D., Boël M. and Romestaing C. Fasting enhances mitochondrial efficiency in duckling skeletal muscle by acting on the substrate oxidation system. Journal of Experimental Biology, 221 : 1-7.

Roussel M., Pontier D., Cohen JM., Lina B. and Fouchet D. Linking influenza epidemic onsets to covariates at different scales using a dynamical model. PeerJ., 6 : e4440.

Royet K., Parisot N., Rodrigue A., Gueguen E. and Condemine G. Identification by Tn_seq of Dickeya dadantii genes required for survival in chicory plants. Molecular Plant Pathology, 66:5575.

Saclier N., Francois C.M., Konecny-Dupre L., Lartillot N., Gueguen L., Duret L., Malard F., Douady C.J. and Lefebure T. Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods. Mol. Biol. Evol., 35:2900-2912.

Schwob G., Roy M., Pozzi A.C., Herrera-Belaroussi A. and Fernandez M.P. In Planta Sporulation of Frankia spp. as a Determinant of Alder-Symbiont Interactions. Appl Envrion Microbiol., 84(23).

Simonet P., Gaget K., Balmand S., Ribeiro-Lopes M., Parisot N., Buhler K., Duport G., Vulsteke V., Febvay G., Heddi A., Charles H., Callaerts P. and Calevro F. A novel cell death process eliminates bacteriocytes in the pea aphid/Buchnera symbiotic system. Proc. Natl. Acad Sc., USA, 115(8) 1819-1828.

Teulier L., Guillard L., Leon C., Romestaing C. and Voituron Y. Consequences of electroshock-induced narcosis in fish muscle : from mitochondria to swim performance. Journal of Fish Biology, 92 : 1805-1818.

Vacheron J., Desbrosses G., Renoud S., Padilla R., Walker V., Muller D. and Prigent-Combaret C. Differential Contribution of Plant-Beneficial Functions from Pseudomonas kilonensis F113 to Root System Architecture Alterations in Arabidopsis thaliana and Zea mays. Molecular Plant-Microbe Interactions, 31:212-223.

Voisin J., Cournoyer B., Vienney A. and Mermillod-Blondin F. Aquifer recharge with stormwater runoff in urban areas : Influence of vadose zone thickness on nutrient and bacterial transfers from the surface of infiltration basins to groundwater. Science of the Total Environment, 637–638.1496–1507.

Zidat T., Dufour A.B., Meiffren G., Gabirot M., Comte G. and Allaine D. Anal scent gland secretions inform on sexual maturity, sex and social status in the Alpine marmot, Marmota marmota (Rodentia : Sciuridae) : a role in intrasexual competition in cooperative breeders ?. Biological Journal of the Linnean Society, 125:229-239.


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  • 2018