2016

mardi 3 octobre 2017

Les publications illustrent les collaborations scientifiques au sein de la FR BioEnviS.
Elles sont portées par au moins 2 unités de la FR et/ou ont bénéficié des services des plateformes de celle-ci.

Attaiech L., Boughammoura A., Brochier-Armanet C., Allatif O., Peillard-Fiorente F., Edwards R.A., Omar A.R., MacMillan A.M., Glover M. and Charpentier X. Silencing of natural transformation by an RNA chaperone and a multitarget small RNA. Proc Natl Acad Sci USA, 113(31) : 8813-8818.

Baa-Puyoulet P., Parisot N., Febvay G., Huerta-Cepas J., Vellozo A., Gabaldon T., Calevro F., Charles H. and Colella S. ArthropodaCyc : a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods Database. The Journal of Biological Databases and Curation, baw081.

Bardon C., Piola F., Haichar E.Z., Meiffren G., Comte G., Missery B., Balby M. and Poly F. Identification of B-type procyanidins in Fallopia spp. involved in biological denitrification inhibition. Environmental Microbiology, 18(2) : 644-655.

Bardon C., Poly F., Piola F., Pancton M., Comte G., Meiffren G. and El Zahar Haichar. Mechanism of biological denitrification inhibition : procyanidins induce an allosteric transition of the membrane-bound nitrate reductase through membrane alteration. FEMS Microbiology Ecology, 92 : 1-11.

Baude J., Vial L., Villard C., Campillo T., Lavire C., Nesme X. and Hommais F. Coordinated Regulation of Species-Specific Hydroxycinnamic Acid Degradation and Siderophore Biosynthesis Pathways in Agrobacterium fabrum. Applied and Environmental Microbiology, 82 : 3515-3524.

Bodilis J., Youenou B., Briolay J., Brothier E., Favre-Bonté S. and Nazaret S. Draft genome sequences of Stenotrophomonas maltophilia strains Sm32COP, Sm41DVV, Sm46PAILV, SmF3, SmF22, SmSOFb1 and SmCVFa1, isolated from different manures in France. Genome Announc, 4(4) e00841-16.

Cariou M., Duret L. and Charlat S. How and how much does RAD-seq bias genetic diversity estimates ? BMC Evol Biol., 16 : 240.

Cabrol L., Poly F., Malhautier L., Pommier T., Lerondelle C., Verstraete W., Lepeuple AS., Fanlo JL. and Le Roux W. Management of microbial communities through transient disturbances enhances the functional resilience of nitrifying gas-biofilters to future disturbances. Environ. Science & Technology, 50 : 338-348.

Carro L., Pujic P., Alloisio N., Fournier P., Boubakri H., Poly F., Rey M., Heddi A. and Normand P. Physiological effects of major upregulated Alnus glutinosa peptides on Frankia sp. strain ACN14a. Microbiology, 162 : 1–12.

Carrouel F., Viennot S., Santamaria J., Veber P., Bourgeois D. Quantitative molecular detection of 19 major pathogens in the interdental biofilm of periodontally healthy young adults. Front. Microbiol., 7 : 840.

Cavé L., Brothier E., Abrouk D., Bouda P.S., Hien E. and Nazaret S. Efficiency and sensitivity of the digital droplet PCR for the quantification of antibiotic resistance genes in soils and organic residues. Appl Microbiol Biotechno, 100 : 10597–10608.

Cayuela H., Lengagne T., Kaufmann B., Joly P. and Léna J.P. Larval competition risk shapes male– male competition and mating behavior in an anuran. Behavioral Ecology, 27(6) : 1726–1733.

Cotin-Galvan L., Pozzi A., Schwob G., Fournier P., Fernandez M.P. and Herrera-Belaroussi A. In-planta sporulation capacity enhances infectivity and rhizospheric competitiveness of Frankia strains. Microbes Environ., 31(1) : 11-8.

Coupat-Goutaland B., Régoudis E., Besseyrias M., Mularoni A., Binet M., Herbelin P. and Pélandakis M. Population structure in Naegleria fowleri as revealed by microsatellite markers. PLoS One 11(4) : e0152434.

Deredjian A., Alliot N., Blanchard L., Brothier E., Amane M., Cambier P., Jolivet C., Khelil M.N., Nazaret S., Saby N., Thioulouse J. and Favre-Bonté S. Occurrence of Stenotrophomonas maltophilia in agricultural soils and antibiotic resistance properties. Research in Microbiology, 167 : 313-324.

Dumas M.E., Domange C., Calderari S., Martínez A.R., Ayala R., Wilder S.P., Suárez-Zamorano N., Collins S.C., Wallis R.H., Gu Q., Wang Y., Hue C., Otto G.W., Argoud K., Navratil V., Mitchell S.C., Lindon J.C., Holmes E., Cazier J.B., Nicholson J.K. and Gauguier D. Topological analysis of metabolic networks integrating co-segregating transcriptomes and metabolomes in type 2 diabetic rat congenic series. Genome Med., 8, 101.

Duprey A., Nasser W., Léonard S., Brochier-Armanet C. and Reverchon S. Transcriptional start site turnover in the evolution of bacterial paralogous genes - the pelE-pelD virulence genes in Dickeya. FEBS J., 283(22) : 4192-4207.

Francois C.M., Duret L., Simon L., Mermillod-Blondin F., Malard F., Konecny-Dupre L., Planel R., Penel S., Douady C.J. and Lefebure T. No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes, Molecular biology and evolution, 33 : 2605-20.

Freyermuth F., Rau F., Kokunai Y., Linke T., Sellier C., Nakamori M., Kino Y., Arandel L., Jollet A., Thibault C., Philipps M., Vicaire S., Jost B., Udd B., Day J.W., Duboc D., Wahbi K., Matsumura T., Fujimura H., Mochizuki H., Deryckere F., Kimura T., Nukina N., Ishiura S., Lacroix V., Campan-Fournier A., Navratil V., Chautard E., Auboeuf D., Horie M., Imoto K., Lee K.Y., Swanson M.S., Lopez de Munain A., Inada S., Itoh H., Nakazawa K., Ashihara T., Wang E., Zimmer T., Furling D., Takahashi M.P., Charlet-Berguerand N. Splicing misregulation of SCN5A contributes to cardiac-conduction delay and heart arrhythmia in myotonic dystrophy. Nat. Commun., 7 : 11067.

Goubert C., Minard G., Vieira C. and Boulesteix M. Population genetics of the Asian tiger mosquito Aedes albopictus, an invasive vector of human diseases. Heredity. 117(3):125-34.

Grégoire L., Haudry A. and Lerat E. The transposable element environment of human genes is associated with histone and expression changes in cancer. BMC Genomics, 17 : 588.

Jiang X., Zghidi-Abouzid O., Oger-Desfeux C., Hommais F., Greliche N., Muskhelishvili G., Nasser W. and Reverchon S. Global transcriptional response of Dickeya dadantii to environmental stimuli relevant to the plant infection. Env. Microbiol., 18 : 3651-3672.

Julien-Laferrière A., Bulteau L., Parrot D., Marchetti-Spaccamela A., Stougie L., Vinga S., Mary A. and Sagot MF. A Combinatorial Algorithm for Microbial Consortia Synthetic Design. Sci Rep., 6 : 29182.

Jusselme MD., Saccone P., Zinger L., Faure M., Le Roux X., Guillaumand N., Bernard L. Clement JC. and Poly F. Variations in snow depth modify N-related soil microbial abundances and functioning during winter in subalpine grassland. Soil Biology and Biochemistry, 92:27-37.

Karaki L., Da Silva P., Rizk F., Chouabe C., Chantret N., Eyraud V., Gressent F., Sivignon C., Rahioui I., Kahn D., Brochier-Armanet C., Rahbé Y. and Royer C. Genome-wide analysis identifies gain and loss/change of function within the small multigenic insecticidal Albumin 1 family of Medicago truncatula. BMC Plant Biology, 16(1) : 63.

Lamonica D., Clement B., Charles S. and Lopes C. Modelling algae-duckweed interaction under chemical pressure within a laboratory microcosm. Ecotoxicology and Environmental Safety, 128 : 252-65.

Lamonica D., Herbach U., Orias F., Clément B., Charles S. and Lopes C. Mechanistic modelling of daphnid-algae dynamics within a laboratory microcosm. Ecological Modelling, 320 : 213-230.

Lardy S., Rey B., Salin K., Voituron Y. and Cohas A. Beneficial effects of group size on oxidative balance in a wild cooperative breeder. Behavioral Ecology, 27 : 1820-1825.

Lepetit D., Gillet B., Hughes S., Kraaijeveld K. and Varaldi J. Genome Sequencing of the Behavior Manipulating Virus LbFV Reveals a Possible New Virus Family. Genome Biol Evol., 8:3718-3739.

Li X., Grand L., Pouleriguen T., Queneau Y., da Silva P., Rahbe Y., Poessel J. L. and Moebs-Sanchez S. Synthesis of new dicinnamoyl 4-deoxy quinic acid and methyl ester derivatives and evaluation of the toxicity against the pea aphid Acyrthosiphon pisum. Org Biomol Chem, 14 : 2487-97.

Libourel PA. and Herrel A. Sleep in amphibians and reptiles : a review and a preliminary analysis of evolutionary patterns. Biological Reviews, 91 (3), 833-866.

Lopez-Maestre H., Brinza L., Marchet C., Kielbassa J., Bastien S., Boutigny M., Monnin D., El Filali A., Carareto CM., Vieira C., Picard F., Kremer N., Vavre F., Sagot MF. and Lacroix V. SNP calling from RNA-seq data without a reference genome : identification, quantification, differential analysis and impact on the protein sequence. Nucleic Acids Res., 44(19) : e148.

Michelland R., Thioulouse J., Kyselková M. and Grundmann G. Bacterial Community Structure at the Microscale in Two Different Soils. Microbial Ecology, 72 : 717-724.

Monnin D., Kremer N., Berny C., henry H., Dumet A., Voituron Y., Desouhant E. and Vavre F. Influence of oxidative homeostasis on bacterial density and cost of infection in Drosophila–Wolbachia symbioses. Journal of Evolutionary Biology, 29 : 1211-1222.

Nouioui I., Ghodhbane-Gtari F., Carmen Montero_Calasanz M.D., Göker M., Meier-Kolthoff J.P., Schumann P., Rohde M., Goodfellow M., Fernandez M.P., Normand P., Tisa L.S., Klenk H-P. and Gtari M. Proposal of a type strain for Frankia alni (Woronin 1866) Von Tubeuf 1895, emended description of Frankia alni, and recognition of Frankia casuarinae sp. nov. and Frankia elaeagni sp. nov. IJSEM, 66 : 5201-5210.

Plantamp C., Salort C., Gibert P., Dumet A., Mialdea G., Mondy N., and Voituron Y. All or nothing : Survival, reproduction and oxidative balance in Spotted Wing Drosophila (Drosophila suzukii) in response to cold. Journal of Insect Physiology 89 : 28–36.

Pouyet F., Bailly-Bechet M., Mouchiroud D. and Gueguen L. SENCA : A Multilayered Codon Model to Study the Origins and Dynamics of Codon Usage. Genome biology and evolution, 8 : 2427-41.

Rey B., Dégletagne C., Bodennec J., Monternier P.A., Mortz M., Roussel D., Romestaing C., Rouanet J.L., Tornos J. and Duchamp C. Hormetic response triggers multifaceted anti-oxidant strategies in immature king penguins (Aptenodytes patagonicus). Free Radic Biol Med., 97 : 577-587.

Roussel M., Pontier D., Cohen JM., Lina B. and Fouchet D. Quantifying the role of weather on seasonal influenza. BMC Public Health, 16 : 441.

Rozier C., Erban A., Hamzaoui J., Prigent-Combaret C., Comte G., Kopka J., Czarnes S. and Legendre L.. Xylem sap metabolite profile changes during phytostimulation of maize by the plant growth-promoting rhizobacterium Azospirillum lipoferum CRT1. Metabolomics, (Los Angel) 6 :182.

Salvetti A., Couté Y., Epstein A., Arata L., Kraut A., Navratil V., Bouvet P. and Greco A. Nuclear Functions of Nucleolin through Global Proteomics and Interactomic Approaches. J Proteome Res., 15(5) : 1659-69.

Simonet P., Duport G., Gaget K., Weiss-Gayet M., Colella S., Febvay G., Charles H., Viñuelas J., Heddi A. and Calevro F. Direct flow cytometry measurements reveal a fine-tuning of symbiotic cell dynamics according to the host developmental needs in aphid symbiosis. Sci. Reports., 6 : 19967.

Simonin M., Richaume A., Guyonnet JP., Dubost A., Martins JMF. and Pommier T. Titanium dioxide nanoparticles strongly impact soil microbial function by affecting archaeal nitrifiers. Scientific reports, 6:1-10.

Tattersall G.J., Roussel D., Voituron Y. and Teulier L. Novel energy-saving strategies to multiple stressors in birds : the ultradian regulation of body temperature. Proc Biol Sci., 283(1839).

Teulier L., Rey B., Tornos J., Le Coadic M., Monternier P.A., Bourguignon A., Dolmazon V., Romestaing C., Rouanet J.L., Duchamp C. and Roussel D. Lipid-induced thermogenesis is up-regulated by the first cold-water immersions in juvenile penguins, Journal of comparative physiology. B Biochemical systemic and environmental physiology, 186 : 639-50.

Vacheron J., Combes-Meynet E., Walker V., Gouesnard B., Muller D., Moënne-Loccoz Y. and Prigent-Combaret C. Expression on roots and contribution to maize phytostimulation of 1-aminocyclopropane-1-decarboxylate deaminase gene acdS in Pseudomonas fluorescens F113. Plant Soil., 407 : 187–202.

Vacheron J., Moënne-Loccoz Y., Dubost A., Gonçalves-Martins M., Muller D. and Prigent-Combaret C.. Fluorescent Pseudomonas strains with only few plant-beneficial properties are favored in the maize rhizosphere. Front Plant Sci., 7 : 1212.

Voisin J., Cournoyer B. and Mermillod-Blondin F. Assessment of artificial substrates for evaluating groundwater microbial quality. Ecological Indicators, 71 : 577–586.


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  • 2016