2016

mardi 3 octobre 2017

Les publications illustrent les collaborations scientifiques au sein de la FR BioEnviS.
Elles sont portées par au moins 2 unités de la FR et/ou ont bénéficié des services des plateformes de celle-ci.

Baa-Puyoulet P., Parisot N., Febvay G., Huerta-Cepas J., Vellozo A., Gabaldon T., Calevro F., Charles H., Colella S., 2016. ArthropodaCyc : a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods Database : The Journal of Biological Databases and Curation, 2016 : baw081. doi : 10.1093/database/baw081

Bardon, C., Poly, F., Piola, F., Pancton, M., Comte, G., Meiffren, G., El Zahar Haichar, F., 2016 - Mechanism of biological denitrification inhibition : procyanidins induce an allosteric transition of the membrane-bound nitrate reductase through membrane alteration. FEMS Microbiology Ecology, 92 : 1-11.

Baude J, Vial L, Villard C, Campillo T, Lavire C, Nesme X, Hommais F (2016), Coordinated Regulation of Species-Specific Hydroxycinnamic Acid Degradation and Siderophore Biosynthesis Pathways in Agrobacterium fabrum, Applied and Environmental Microbiology, vol. 82 pp.3515-3524 , doi : 10.1128/AEM.00419-16.

Bodilis J, Youenou B, Briolay J, Brothier E, Favre-Bonté S, Nazaret S. (2016) Draft genome sequences of Stenotrophomonas maltophilia strains Sm32COP, Sm41DVV, Sm46PAILV, SmF3, SmF22, SmSOFb1 and SmCVFa1, isolated from different manures in France. Genome Announc 4(4) e00841-16.

Carro L, Pujic P, Alloisio N, Fournier P, Boubakri H, Poly F, Rey M, Heddi, A & Normand P. 2016. Physiological effects of major upregulated Alnus glutinosa peptides on Frankia sp. strain ACN14a. Microbiology 162, 1–12. doi : 10.1099/mic.0.000291.

Carrouel F., Viennot S., Santamaria J., Veber P., Bourgeois D. (2016) Quantitative molecular detection of 19 major pathogens in the interdental biofilm of periodontally healthy young adults. Front. Microbiol., 7, 840.

Cavé L, E Brothier, D Abrouk, P S Bouda, E Hien, Nazaret S. (2016) Efficiency and sensitivity of the digital droplet PCR for the quantification of antibiotic resistance genes in soils and organic residues. Appl Microbiol Biotechnol 100 : 10597–10608.

Cayuela, H., Lengagne, T., Kaufmann, B., Joly, P., Léna, J.P., 2016 - Larval competition risk shapes male– male competition and mating behavior in an anuran. Behavioral Ecology, 27(6) : 1726–1733.

Cotin-Galvan L, Pozzi A, Schwob G, Fournier P, Fernandez MP & Herrera-Belaroussi A. 2016. In-planta sporulation capacity enhances infectivity and rhizospheric competitiveness of Frankia strains. Microbes Environ. 31(1):11-8. doi : 10.1264/jsme2.ME15090.

Coupat-Goutaland B, Régoudis E, Besseyrias M, Mularoni A, Binet M, Herbelin P, Pélandakis M. (2016). Population structure in Naegleria fowleri as revealed by microsatellite markers. PLoS One 11(4) : e0152434.

Deredjian A, Alliot N, Blanchard L, Brothier E, Amane M, Cambier P, Jolivet C, Khelil M N, Nazaret S, Saby N, Thioulouse J, Favre-Bonté S (2016) Occurrence of Stenotrophomonas maltophilia in agricultural soils and antibiotic resistance properties. Research in Microbiology. 167, 313-324. doi:j.resmic.2016.01.001.

Duprey A, Nasser W, Léonard S, Brochier-Armanet C, Reverchon S. (2016) Transcriptional start site turnover in the evolution of bacterial paralogous genes - the pelE-pelD virulence genes in Dickeya.FEBS J. 2016 Nov ;283(22):4192-4207. doi : 10.1111/febs.13921.

Francois CM, Duret L, Simon L, Mermillod-Blondin F, Malard F, Konecny-Dupre L, Planel R, Penel S, Douady CJ, Lefebure T (2016). No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes, Molecular biology and evolution, vol. 33 pp.2605-20

Freyermuth F., Rau F., Kokunai Y., Linke T., Sellier C., Nakamori M., Kino Y., Arandel L., Jollet A., Thibault C., Philipps M., Vicaire S., Jost B., Udd B., Day J.W., Duboc D., Wahbi K., Matsumura T., Fujimura H., Mochizuki H., Deryckere F., Kimura T., Nukina N., Ishiura S., Lacroix V., Campan-Fournier A., Navratil V., Chautard E., Auboeuf D., Horie M., Imoto K., Lee K.Y., Swanson M.S., Lopez de Munain A., Inada S., Itoh H., Nakazawa K., Ashihara T., Wang E., Zimmer T., Furling D., Takahashi M.P., Charlet-Berguerand N. (2016) Splicing misregulation of SCN5A contributes to cardiac-conduction delay and heart arrhythmia in myotonic dystrophy. Nat. Commun., 7, 11067.

Goubert C, Minard G, Vieira C, Boulesteix M. 2016. Population genetics of the Asian tiger mosquito Aedes albopictus, an invasive vector of human diseases. Heredity. 117(3):125-34.

Jiang X, Zghidi-Abouzid O, Oger-Desfeux C, Hommais F, Greliche N, Muskhelishvili G, Nasser W, Reverchon S. (2016) Global transcriptional response of Dickeya dadantii to environmental stimuli relevant to the plant infection. Environ Microbiol. 2016 Mar 3. doi : 10.1111/1462-2920.13267

Jiang X., Zghidi-Abouzid O., Oger-Desfeux C., Hommais F., Greliche N., Muskhelishvili G., Nasser W., Reverchon S. (2016). Global transcriptional response of Dickeya dadantii to environmental stimuli relevant to the plant infection. Env. Microbiol., 18, 3651-3672.

Karaki L., Da Silva P., Rizk F., Chouabe C., Chantret N., Eyraud V., Gressent F., Sivignon C., Rahioui I., Kahn D., Brochier-Armanet C., Rahbé Y., Royer C., 2016. Genome-wide analysis identifies gain and loss/change of function within the small multigenic insecticidal Albumin 1 family of Medicago truncatula. BMC Plant Biology, 16(1) : 63. doi : 10.1186/s12870-016-0745-0

Lamonica D, Clement B, Charles S, Lopes C (2016). Modelling algae-duckweed interaction under chemical pressure within a laboratory microcosm, Ecotoxicology and Environmental Safety, vol. 128 pp.252-65

Lamonica D, Herbach U, Orias F, Clément B, Charles S, Lopes C (2016). Mechanistic modelling of daphnid-algae dynamics within a laboratory microcosm, Ecological Modelling, vol. 320 pp.213-230

Lardy S, Rey B, Salin K, Voituron Y, Cohas A , 2016. Beneficial effects of group size on oxidative balance in a wild cooperative breeder, Behavioral Ecology, 27:1820-1825

Li, X., L. Grand, T. Pouleriguen, Y. Queneau, P. da Silva, Y. Rahbe, J. L. Poessel, and S. Moebs-Sanchez. 2016. Synthesis of new dicinnamoyl 4-deoxy quinic acid and methyl ester derivatives and evaluation of the toxicity against the pea aphid Acyrthosiphon pisum. Org Biomol Chem 14 : 2487-97.

Michelland R, Thioulouse J, Kyselková M, Grundmann G (2016) Bacterial Community Structure at the Microscale in Two Different Soils. Microbial Ecology 72, 717-724. doi:10.1007/s00248-016-0810-0.

Monnin D, Kremer N, Berny C, henry H, Dumet A, Voituron Y, Desouhant E, Vavre F. Influence of oxidative homeostasis on bacterial density and cost of infection in Drosophila–Wolbachia symbioses . Journal of Evolutionary Biology, 29:1211-1222.

Nouioui I, Ghodhbane-Gtari F, Carmen Montero‑Calasanz MD, Göker M, Meier-Kolthoff JP, Schumann P, Rohde M, Goodfellow M, Fernandez MP, Normand P, Tisa LS, Klenk H-P, Gtari M. 2016. Proposal of a type strain for Frankia alni (Woronin 1866) Von Tubeuf 1895, emended description of Frankia alni, and recognition of Frankia casuarinae sp. nov. and Frankia elaeagni sp. nov. IJSEM 66, 5201-5210 (IF2015=2.43) doi : 10.1099/ijsem.0.001496.

Novel energy-saving strategies to multiple stressors in birds : the ultradian regulation of body temperature. Tattersall GJ, Roussel D, Voituron Y, Teulier L. Proc Biol Sci. 2016 Sep 28 ;283(1839). pii : 20161551. doi : 10.1098/rspb.2016.1551.

Anna Salvetti, Yohann Couté, Alberto Epstein, Loredana Arata, Alexandra Kraut, Vincent Navratil, Philippe Bouvet, and Anna Greco J. 2016 - Nuclear Functions of Nucleolin through Global Proteomics and Interactomic Approaches 15 (5), pp 1659–1669

Plantamp, C., Salort, C., Gibert, P., Dumet, A., Mialdea, G., Mondy, N., Voituron, Y., 2016 - All or nothing : Survival, reproduction and oxidative balance in Spotted Wing Drosophila (Drosophila suzukii) in response to cold. Journal of Insect Physiology 89 : 28–36.

Pouyet F, Bailly-Bechet M, Mouchiroud D, Gueguen L (2016). SENCA : A Multilayered Codon Model to Study the Origins and Dynamics of Codon Usage, Genome biology and evolution, vol. 8 pp.2427-41

Rozier, C., A. Erban, J. Hamzaoui, C. Prigent-Combaret, G. Comte, J. Kopka, S. Czarnes, L. Legendre (2016) Xylem sap metabolite profile changes during phytostimulation of maize by the plant growth-promoting rhizobacterium Azospirillum lipoferum CRT1. Metabolomics (Los Angel) 6:182.

Salvetti, A., Couté Y., Epstein A., Arata L., Kraut A., Navratil V., Bouvet P., Greco A., 2016. Nuclear Functions of Nucleolin through Proteomics and Interactomic Approches. J. Proteome Res, 15(5), 1659-1669.

Teulier L, Rey B, Tornos J, Le Coadic M, Monternier P A, Bourguignon A, Dolmazon V, Romestaing C, Rouanet J L, Duchamp C, Roussel D.. 2016. Lipid-induced thermogenesis is up-regulated by the first cold-water immersions in juvenile penguins, Journal of comparative physiology. B Biochemical systemic and environmental physiology, 186:639-50

Vacheron, J., E. Combes-Meynet, V. Walker, B. Gouesnard, D. Muller, Y. Moënne-Loccoz, C. Prigent-Combaret. 2016. Expression on roots and contribution to maize phytostimulation of 1-aminocyclopropane-1-decarboxylate deaminase gene acdS in Pseudomonas fluorescens F113. Plant Soil. 407:187–202 (IF 2,97).

Vacheron, J., Y. Moënne-Loccoz, A. Dubost, M. Gonçalves-Martins, D. Muller, C. Prigent-Combaret. 2016. Fluorescent Pseudomonas strains with only few plant-beneficial properties are favored in the maize rhizosphere. Front Plant Sci.7:1212.

Voisin, J., Cournoyer, B., Mermillod-Blondina, F., 2016 - Assessment of artificial substrates for evaluating groundwater microbial quality. Ecological Indicators, 71 : 577–586.


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  • 2016