2015

mercredi 20 avril 2016

Les publications illustrent les collaborations scientifiques au sein de la FR BioEnviS.
Elles sont portées par au moins 2 unités de la FR et/ou ont bénéficié des services des plateformes de celle-ci.

Billard E, Domaizon I, Tissot N, Arnaud F, Lyautey E. (2015) Multi-scale phylogenetic heterogeneity of archaea, bacteria, methanogens and methanotrophs in lake sediments. Hydrobiologia 751 : 159–173.

Billoir, E., Navratil, V. et Blaise, B.J. (2015) Sample size calculation in metabolic phenotyping studies. Brief. Bioinform., 16, 813-819.

Blavet N, Blavet H, Muyle A, Kafer J, Cegan R, Deschamps C, Zemp N, Mousset S, Aubourg S, Bergero R, Charlesworth D, Hobza R, Widmer A, Marais GA (2015) Identifying new sex-linked genes through BAC sequencing in the dioecious plant Silene latifolia, BMC Genomics, vol. 16 pp.546-546.

Borland S, Oudart A, Pringent-Combaret C, Borchier-Armanet C, Wisniewski-Dyé F. 2015, Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum. BMC genomics, 16(1):833

Brault V, Duchon A, Romestaing C, Sahun I, Pothion S, Karout M, Borel C, Dembele D, Bizot JC, Messaddeq N, Sharp AJ, Roussel D, Antonarakis SE, Dierssen M, Hérault Y. Opposite phenotypes of muscle strength and locomotor function in mouse models of partial trisomy and monosomy 21 for the proximal Hspa13-App region. PLoS Genet. 2015 Mar 24 ;11(3):e1005062. doi : 10.1371

Cairey-Remonnay A., Deffaud J., Wesolowski-Louvel M., Lemaire M., A. Soulard (2015) Glycolysis controls plasma-membrane glucose sensors to promote glucose signaling in yeasts. Mol Cell Biol 35:747-757 doi : 10.1128/MCB.00515-14

Carro L, Pujic P, Alloisio N, Fournier P, Boubakri H, Hay AE, Poly F, François P, Hocher V, Mergaert P, Balmand S, Rey M, Heddi A & Normand P. 2015. Alnus peptides modify membrane porosity and induce the release of N-rich metabolites from nitrogen fixing Frankia. ISME J. 2014.257 doi:10.1038/ismej.2014.257.

Cayuela, H., Quay, L., Dumet, A., Léna, J.P., Miaud, C., Rivière, V. Intensive vehicle traffic impacts morphology and endocrine stress response in a threatened amphibian. Fauna & Flora International. 51(1) : 182-188.

Chamam, A., F. Wisniewski-Dyé, G. Comte, C. Bertrand, C. Prigent-Combaret. (2015) Differential responses of Oryza sativa secondary metabolism to biotic interactions with cooperative, commensal and phytopathogenic bacteria. Planta 242:1439-1452

Chatagnon, A., Veber, P., Morin, V., Bedo, J., Triqueneaux, G., Semon, M., Laudet, V., d’Alche-Buc, F. et Benoit, G. (2015) RAR/RXR binding dynamics distinguish pluripotency from differentiation associated cis-regulatory elements. Nucleic Acids Res., 43, 4833-4854.

Christina, M., Rouifed, S., Puijalon, S., Vallier, F., Meiffren, G., Bellvert, F., Piola, F. 2015. Allelopathic effect of a native species on a major plant invader in Europe. The Science of Nature, 102 :12.

Cotin-Galvan L, C Pozzi A, Schwob G, Fournier P, P Fernandez M, Herrera-Belaroussi A. 2015. In-planta sporulation capacity enhances infectivity and rhizospheric competitiveness of Frankia strains. Microbes Environ. e-publ : Dec 26.

Cottet M., Piola F., Le Lay Y.F., Rouifed S., Rivière-Honegger A. (2015). How environmental managers perceive and approach the issue of invasive species : the case of Japanese knotweed s.l. (Rhône River, France). Biological Invasion, vol 17, 3433–3453. DiPEE de Lyon

Dequivre M, Diel B, Villard C, Sismeiro O, Durot M, Coppée JY, Nesme X, Vial L, Hommais F. Small RNA Deep-Sequencing Analyses Reveal a New Regulator of Virulence in Agrobacterium fabrum C58. Mol Plant Microbe Interact. 2015 May ;28(5):580-9. doi : 10.1094/MPMI-12-14-0380-FI.

Desprat, J.L., Lengagne, T., Dumet, A., Desouhant, E., Mondy, N., 2015 - Immunocompetence handicap hypothesis in tree frog : trade-off between sexual signals and immunity ? Behavioral Ecology, 26(4) : 1138–1146.

Dolédec S., Castella E., Forcellini M., Olivier J.-M., Paillex A., Sagnes P. (2015). The generality of changes in the trait composition of fish and invertebrate communities after flow restoration in a large river (French Rhône). Freshwater Biology, 60, 1221-1236. DiPEE de Lyon

Dore J, Perraud M, Dieryckx C, Kohler A, Morin E, Henrissat B, Lindquist E, Zimmermann SD, Girard V, Kuo A, Grigoriev IV, Martin F, Marmeisse R, Gay G (2015), Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis, New Phytologist, vol. 208 pp.1169-1187 , doi : 10.1111/nph.13546.

Etienne D, Destas M, Lyautey E, Marti R, Ruffaldi P, Georges-Leroy M, Dambrine E, Topp E. (2015) Two thousand–year reconstruction of livestock production intensity in France using sediment-archived fecal Bacteroidales and source-specific mitochondrial markers. The Holocene 25 : 1-10.

Faucon, F., Dusfour, I., Gaude, T., Navratil, V., Boyer, F., Chandre, F., Sirisopa, P., Thanispong, K., Juntarajumnong, W., Poupardin, R. et al. (2015) Identifying genomic changes associated with insecticide resistance in the dengue mosquito Aedes aegypti by deep targeted sequencing. Genome Res., 25, 1347-1359.

Golanowska M, Galardini M, Bazzicalupo M, Hugouvieux-Cotte-Pattat N, Mengoni A, Potrykus M, Slawiak M, Lojkowska E (2015) Draft Genome Sequence of a Highly Virulent Strain of the Plant Pathogen Dickeya solani, IFB0099, Genome Announcements, vol. 3, doi : 10.1128/genomeA.00109-15.

Granqvist E, Sun J, Op den Camp R, Pujic P, Hill, L, Normand P, Morris RJ, Downie JA, Geurts R and Oldroyd GED. 2015. Bacterial-induced calcium oscillations are a common feature of symbiotic signalling in nodulating legumes and non-legumes. New Phytol. 207:551-558. doi : 10.1111/nph.13464.

Grimault A, Gendrot G, Chaignon S, Gilard F, Tcherkez G, Thévenin J, Dubreucq B, Depège-Fargeix N, Rogowsky PM (2015) Role of B3 domain transcription factors of the AFL family in maize kernel filling. Plant Sci 236:116-125

Guirimand, T., Delmotte, S. et Navratil, V. (2015) VirHostNet 2.0 : surfing on the web of virus/host molecular interactions data. Nucleic Acids Res., 43, D583-587.

Goubert C, Modolo L, Vieira C, Valiente Moro C, Mavingui P, Boulesteix M. 2015. De novo assembly and annotation of the Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE from raw genomic reads and comparative analysis with the yellow fever mosquito (Aedes aegypti). Genome Biology and Evolution. 7(4) : 1192–1205.

Josserand, R., Troïanowski, M., Grolet, O., Desprat, J.L., Lengagne, T., Mondy, N., 2015 - A phytohaemagglutinin challenge test to assess immune responsiveness of European tree frog Hyla arborea. Amphibia-Reptilia 36 : 111-118.

Kone Martine,Comte Gilles, Somé Madjélia,Zongo Inoussa,Joly Pierre,2015. Comparative performance of sand and coconut substrate in urban wastewater treatment. Performances comparees du sable et du substrat de coco en traitement d’eaux residuaires urbaines,"Chemistry & Chemical Engineering", Biotechnology, Food Industry",16,1-12

Lassalle F, Périan S, Bataillon T, Nesme X, Duret L, Daubin V. 2015. GC-content evolution in bacterial genomes : the biased gene conversion hypothesis expands. PLOS Genetics (PGENETICS-D-14-01340R1)

Lengagne, T., Gomez, T., Josserand, R., Voituron, Y., 2015 - Long Recording Sequences : How to Track the Intra-Individual Variability of Acoustic Signals. PlosOne 10(5) : e0123828 : 1-11.

Loth K., Costechareyre D., Effantin G., Rahbé Y., Condemine G., Landon C., da Silva P. (2015) New Cyt-like d-endotoxins from Dickeya dadantii : structure and aphicidal activity. Scientific Reports, 5, pp.8791. doi : 10.1038/srep08791

Luquet, E., Léna, J.P., Miaud, C., Plénet, S., 2015 - Phenotypic divergence of the common toad (Bufo bufo) along an altitudinal gradient : evidence for local adaptation. Heredity, 114(1) : 69-79.

Masson F., Moné Y., Vigneron A., Vallier A., Parisot N., Vincent-Monégat C., Balmand S., Carpentier M.C., Zaidman-Rémy A., Heddi A., 2015. Weevil endosymbiont dynamics is associated with a clamping of immunity. BMC Genomics, 16 : 819. doi : 10.1186/s12864-015-2048-5

Minard G, Tran FH, Van Tran Van, Goubert C, Bellet C, Lambert G, Khanh Ly Huynh Kim, Trang Huynh Thi Thuy, Mavingui P, Valiente-Moro C. 2015. French invasive Asian tiger mosquito populations harbor reduced bacterial microbiota and genetic diversity compared to Vietnamese autochthonous relatives. Microbial Symbioses. 6:970. doi : 10.3389/fmicb.2015.00970.

Mitchell, A., Chang, H.Y., Daugherty, L., Fraser, M., Hunter, S., Lopez, R., McAnulla, C., McMenamin, C., Nuka, G., Pesseat, S. et al. (2015) The InterPro protein families database : the classification resource after 15 years. Nucleic Acids Res., 43, D213-221.

Monternier PA, Fongy A, Hervant F, Drai J, Collin-Chavagnac D, Rouanet JL, Roussel D. Skeletal muscle phenotype affects fasting-induced mitochondrial oxidative phosphorylation flexibility in cold-acclimated ducklings. J Exp Biol. 2015 Aug ;218(Pt 15):2427-34. doi : 10.1242/jeb.122671.

Orias, F., Simon, L., Mialdea, G., Clair, A., Brosselin, V., Perrodin, Y., 2015 - Bioconcentration of 15N-tamoxifen at environmental concentration in liver, gonad and muscle of Danio rerio. Ecotoxicology and Environmental Safety 120 : 457–462.

Oudot-Canaff, J., Bornette, G., Vallier, F., De Wilde, M., Piola, F., Martel, E. 2015. Genetic temporal dynamics in restored wetlands : A case of a predominantly clonal species, Berula erecta (Huds.) Coville, Aquatic Botany 126 : 7-15, DOI : 10.1016/j.aquabot.2015.05.006

Persson T, Demina I, Battenberg K, Vigil-Stenman T, Vanden Heuvel B, Pujic P, Facciotti MT, Wilbanks EG, O’Brien A, Fournier P, Cruz Hernandez MA, Médigue C, Normand P, Pawlowski K & Berry AM. 2015. Candidatus Frankia datiscae Dg1, the actinobacterial microsymbiont of Datisca glomerata, uses Nod factors for establishment of symbiosis with its host plant. PLoS One 10(5):e0127630. doi : 10.1371/journal.pone.0127630.

Philippon H, Brochier-Armanet C, Perriere G (2015) Evolutionary history of phosphatidylinositol- 3-kinases : ancestral origin in eukaryotes and complex duplication patterns, BMC Evol. Biol., 15, 226.

Pozzi AC, Bautista-Guerrero H, Nouioui I, Cotin-Galvan L, Pepin R, Fournier P, Menu F, Fernandez MP, Herrera-Belaroussi A. 2015. In-planta sporulation phenotype : a major life history trait to understand the evolution of Alnus-infective Frankia strains. Environ Microbiol. 17:3125-38. doi : 10.1111/1462-2920.12644.

Pujic P, Bolotin A, Fournier P, Sorokin A, Lapidus A, Richau KH, Briolay J, Mebarki F, Normand P, Sellstedt A. (2015) Genome sequence of the atypical symbiotic Frankia R43 strain, a nitrogen-fixing and hydrogen-producing actinobacterium. Genome Announc 3(6) : e01387-15.

Raquin V, Valiente-Moro C, Saucereau Y, Tran FH, Potier P, Mavingui P. 2015. Native Wolbachia from Aedes albopictus Blocks Chikungunya Virus Infection In Cellulo Bourtzis, K. PLOS ONE. 10:e0125066. doi : 10.1371/journal.pone.0125066.

René-Martellet M, Valiente Moro C, Chêne G, Bourdoiseau G, Chabanne L, Mavingui P. (2015) Update on epidemiology of canine babesiosis in Southern France. BMC Vet Res 11:223.

Rey, B., Pélisson, P.F., Bel-Venner, M.C., Voituron, Y., Venner, S., 2015 - Revisiting the link between breeding effort and oxidative balance through field evaluation of two sympatric sibling insect species. Evolution 69(3) : 815–822.

Rey, B., Halsey, L.G., Hetem, R.S., Fuller, A., Mitchell, D., Rouanet, J.L., 2015 - Estimating resting metabolic rate by biologging core and subcutaneous temperature in a mammal. Comparative Biochemistry and Physiology, Part A 183 : 72–77.

Rousseau D, Widiez T, Di Tommaso S, Rositi H, Adrien J, Maire E, Langer M, Olivier C, Peyrin F, Rogowsky P. Fast virtual histology using X-ray in-line phase tomography : application to the 3D anatomy of maize developing seeds. Plant Methods. 2015 [PMID:26688690]

Roussel D., Salin K., Dumet A., Romestaing C., Rey B., Voituron Y. 2015 Oxidative phosphorylation efficiency, proton conductance and reactive oxygen species production of liver mitochondria correlates with body mass in frogs. Journal of Experimental Biology. Experimental Biology, 218 : 3222-3228.

Semeria M, Tannier E, Gueguen L (2015) Probabilistic modeling of the evolution of gene synteny within reconciled phylogenies, BMC Bioinformatics, vol. 16 Suppl 14 pp.S5-S5

Simonin M, Le Roux X, Poly F, Lerondelle C, Hungate BA, Nunan Naoise, Niboyet A. 2015. Coupling Between and Among Ammonia Oxidizers and Nitrite Oxidizers in Grassland Mesocosms Submitted to Elevated CO2 and Nitrogen Supply. Microbial Ecology. 70:809-818. doi : 10.1007/s00248-015-0604-9.

Troïanowski, M., Condette, C., Mondy, N., Dumet, A., Lengagne, T., 2015 - Traffic noise impact stress and coloration but not calls in the European treefrog (Hyla arborea). Behaviour, 152 : 821-836

Voisin J., Cournoyer B., Mermillod-Blondin F. (2015) Utilisation de billes de verre comme substrats artificiels pour la caractérisation des communautés microbiennes dans les nappes phréatiques : mise au point méthodologique. La Houille Blanche, 4 : 52-57.

Youenou B, Favre-Bonté S, Bodilis J, Brothier E, Dubost A, Muller D, Nazaret S. (2015) Comparative genomics of environmental and clinical Stenotrophomonas maltophilia strains with different antibiotic resistance profiles. Genome Biology and Evolution. 2015 7(9):2484-505. doi : 10.1093/gbe/evv161.


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  • 2015