2015

mercredi 20 avril 2016

Les publications illustrent les collaborations scientifiques au sein de la FR BioEnviS.
Elles sont portées par au moins 2 unités de la FR et/ou ont bénéficié des services des plateformes de celle-ci.

Bardon, C., Piola, F., Haichar, Z., Meiffren, G., Comte, G., Missery,B., Balby, M., Poly, F. Identification of B-type procyanidins in Fallopia spp. involved in biological denitrification inhibition (BDI). Environmental Microbiology, doi : 10.1111/1462-2920.13062

Billoir, E., Navratil, V. et Blaise, B.J. (2015) Sample size calculation in metabolic phenotyping studies. Brief. Bioinform., 16, 813-819.

Borland S, Oudart A, Pringent-Combaret C, Borchier-Armanet C, Wisniewski-Dyé F. 2015, Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum. BMC genomics, 16(1):833

Cairey-Remonnay A., Deffaud J., Wesolowski-Louvel M., Lemaire M., A. Soulard (2015) Glycolysis controls plasma-membrane glucose sensors to promote glucose signaling in yeasts. Mol Cell Biol 35:747-757 doi : 10.1128/MCB.00515-14

Carro L, Pujic P, Alloisio N, Fournier P, Boubakri H, Hay AE, Poly F, François P, Hocher V, Mergaert P, Balmand S, Rey M, Heddi A & Normand P. 2015. Alnus peptides modify membrane porosity and induce the release of N-rich metabolites from nitrogen fixing Frankia. ISME J. 2014.257 doi:10.1038/ismej.2014.257.

Chamam, A., F. Wisniewski-Dyé, G. Comte, C. Bertrand, C. Prigent-Combaret. (2015) Differential responses of Oryza sativa secondary metabolism to biotic interactions with cooperative, commensal and phytopathogenic bacteria. Planta 242:1439-1452

Chatagnon, A., Veber, P., Morin, V., Bedo, J., Triqueneaux, G., Semon, M., Laudet, V., d’Alche-Buc, F. et Benoit, G. (2015) RAR/RXR binding dynamics distinguish pluripotency from differentiation associated cis-regulatory elements. Nucleic Acids Res., 43, 4833-4854.

Christina, M., Rouifed, S., Puijalon, S., Vallier, F., Meiffren, G., Bellvert, F., Piola, F. 2015. Allelopathic effect of a native species on a major plant invader in Europe. The Science of Nature, 102 :12.

Cotin-Galvan L, C Pozzi A, Schwob G, Fournier P, P Fernandez M, Herrera-Belaroussi A. 2015. In-planta sporulation capacity enhances infectivity and rhizospheric competitiveness of Frankia strains. Microbes Environ. e-publ : Dec 26.

Cottet M., Piola F., Le Lay Y.F., Rouifed S., Rivière-Honegger A. (2015). How environmental managers perceive and approach the issue of invasive species : the case of Japanese knotweed s.l. (Rhône River, France). Biological Invasion, vol 17, 3433–3453.

Dequivre M, Diel B, Villard C, Sismeiro O, Durot M, Coppée JY, Nesme X, Vial L, Hommais F. Small RNA Deep-Sequencing Analyses Reveal a New Regulator of Virulence in Agrobacterium fabrum C58. Mol Plant Microbe Interact. 2015 May ;28(5):580-9. doi : 10.1094/MPMI-12-14-0380-FI.

Desprat, J.L., Lengagne, T., Dumet, A., Desouhant, E., Mondy, N., 2015 - Immunocompetence handicap hypothesis in tree frog : trade-off between sexual signals and immunity ? Behavioral Ecology, 26(4) : 1138–1146.

Dolédec S., Castella E., Forcellini M., Olivier J.-M., Paillex A., Sagnes P. (2015). The generality of changes in the trait composition of fish and invertebrate communities after flow restoration in a large river (French Rhône). Freshwater Biology, 60, 1221-1236.

Dore J, Perraud M, Dieryckx C, Kohler A, Morin E, Henrissat B, Lindquist E, Zimmermann SD, Girard V, Kuo A, Grigoriev IV, Martin F, Marmeisse R, Gay G (2015), Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis, New Phytologist, vol. 208 pp.1169-1187 , doi : 10.1111/nph.13546.

Faucon, F., Dusfour, I., Gaude, T., Navratil, V., Boyer, F., Chandre, F., Sirisopa, P., Thanispong, K., Juntarajumnong, W., Poupardin, R. et al. (2015) Identifying genomic changes associated with insecticide resistance in the dengue mosquito Aedes aegypti by deep targeted sequencing. Genome Res., 25, 1347-1359.

Golanowska M, Galardini M, Bazzicalupo M, Hugouvieux-Cotte-Pattat N, Mengoni A, Potrykus M, Slawiak M, Lojkowska E (2015) Draft Genome Sequence of a Highly Virulent Strain of the Plant Pathogen Dickeya solani, IFB0099, Genome Announcements, vol. 3, doi : 10.1128/genomeA.00109-15.

Granqvist E, Sun J, Op den Camp R, Pujic P, Hill, L, Normand P, Morris RJ, Downie JA, Geurts R and Oldroyd GED. 2015. Bacterial-induced calcium oscillations are a common feature of symbiotic signalling in nodulating legumes and non-legumes. New Phytol. 207:551-558. doi : 10.1111/nph.13464.

Grimault A, Gendrot G, Chaignon S, Gilard F, Tcherkez G, Thévenin J, Dubreucq B, Depège-Fargeix N, Rogowsky PM (2015) Role of B3 domain transcription factors of the AFL family in maize kernel filling. Plant Sci 236:116-125

Guirimand, T., Delmotte, S. et Navratil, V. (2015) VirHostNet 2.0 : surfing on the web of virus/host molecular interactions data. Nucleic Acids Res., 43, D583-587.

Goubert C, Modolo L, Vieira C, Valiente Moro C, Mavingui P, Boulesteix M. 2015. De novo assembly and annotation of the Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE from raw genomic reads and comparative analysis with the yellow fever mosquito (Aedes aegypti). Genome Biology and Evolution. 7(4) : 1192–1205.

Lassalle F, Périan S, Bataillon T, Nesme X, Duret L, Daubin V. 2015. GC-content evolution in bacterial genomes : the biased gene conversion hypothesis expands. PLOS Genetics (PGENETICS-D-14-01340R1)

Loth K., Costechareyre D., Effantin G., Rahbé Y., Condemine G., Landon C., da Silva P. (2015) New Cyt-like d-endotoxins from Dickeya dadantii : structure and aphicidal activity. Scientific Reports, 5, pp.8791.

Minard G, Tran FH, Van Tran Van, Goubert C, Bellet C, Lambert G, Khanh Ly Huynh Kim, Trang Huynh Thi Thuy, Mavingui P, Valiente-Moro C. 2015. French invasive Asian tiger mosquito populations harbor reduced bacterial microbiota and genetic diversity compared to Vietnamese autochthonous relatives. Microbial Symbioses. 6:970. doi : 10.3389/fmicb.2015.00970.

Mitchell, A., Chang, H.Y., Daugherty, L., Fraser, M., Hunter, S., Lopez, R., McAnulla, C., McMenamin, C., Nuka, G., Pesseat, S. et al. (2015) The InterPro protein families database : the classification resource after 15 years. Nucleic Acids Res., 43, D213-221.

Oudot-Canaff, J., Bornette, G., Vallier, F., De Wilde, M., Piola, F., Martel, E. 2015. Genetic temporal dynamics in restored wetlands : A case of a predominantly clonal species, Berula erecta (Huds.) Coville, Aquatic Botany 126 : 7-15, DOI : 10.1016/j.aquabot.2015.05.006

Persson T, Demina I, Battenberg K, Vigil-Stenman T, Vanden Heuvel B, Pujic P, Facciotti MT, Wilbanks EG, O’Brien A, Fournier P, Cruz Hernandez MA, Médigue C, Normand P, Pawlowski K & Berry AM. 2015. Candidatus Frankia datiscae Dg1, the actinobacterial microsymbiont of Datisca glomerata, uses Nod factors for establishment of symbiosis with its host plant. PLoS One 10(5):e0127630. doi : 10.1371/journal.pone.0127630.

Pozzi AC, Bautista-Guerrero H, Nouioui I, Cotin-Galvan L, Pepin R, Fournier P, Menu F, Fernandez MP, Herrera-Belaroussi A. 2015. In-planta sporulation phenotype : a major life history trait to understand the evolution of Alnus-infective Frankia strains. Environ Microbiol. 17:3125-38. doi : 10.1111/1462-2920.12644.

Raquin V, Valiente-Moro C, Saucereau Y, Tran FH, Potier P, Mavingui P. 2015. Native Wolbachia from Aedes albopictus Blocks Chikungunya Virus Infection In Cellulo Bourtzis, K. PLOS ONE. 10:e0125066. doi : 10.1371/journal.pone.0125066.

Rey, B., Pélisson, P.F., Bel-Venner, M.C., Voituron, Y., Venner, S., 2015 - Revisiting the link between breeding effort and oxidative balance through field evaluation of two sympatric sibling insect species. Evolution 69(3) : 815–822.

Rey, B., Halsey, L.G., Hetem, R.S., Fuller, A., Mitchell, D., Rouanet, J.L., 2015 - Estimating resting metabolic rate by biologging core and subcutaneous temperature in a mammal. Comparative Biochemistry and Physiology, Part A 183 : 72–77.

Rousseau D, Widiez T, Di Tommaso S, Rositi H, Adrien J, Maire E, Langer M, Olivier C, Peyrin F, Rogowsky P. Fast virtual histology using X-ray in-line phase tomography : application to the 3D anatomy of maize developing seeds. Plant Methods. 2015 [PMID:26688690]

Roussel D., Salin K., Dumet A., Romestaing C., Rey B., Voituron Y. 2015 Oxidative phosphorylation efficiency, proton conductance and reactive oxygen species production of liver mitochondria correlates with body mass in frogs. Journal of Experimental Biology. Experimental Biology, 218 : 3222-3228.

Simonin M, Le Roux X, Poly F, Lerondelle C, Hungate BA, Nunan Naoise, Niboyet A. 2015. Coupling Between and Among Ammonia Oxidizers and Nitrite Oxidizers in Grassland Mesocosms Submitted to Elevated CO2 and Nitrogen Supply. Microbial Ecology. 70:809-818. doi : 10.1007/s00248-015-0604-9.

Voisin J., Cournoyer B., Mermillod-Blondin F. (2015) Utilisation de billes de verre comme substrats artificiels pour la caractérisation des communautés microbiennes dans les nappes phréatiques : mise au point méthodologique. La Houille Blanche, 4 : 52-57.

Youenou B, Favre-Bonté S, Bodilis J, Brothier E, Dubost A, Muller D, Nazaret S. (2015) Comparative genomics of environmental and clinical Stenotrophomonas maltophilia strains with different antibiotic resistance profiles. Genome Biology and Evolution. 2015 7(9):2484-505. doi : 10.1093/gbe/evv161.


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  • 2015