2013

mercredi 14 janvier 2015

Les publications illustrent les collaborations scientifiques au sein de la FR BioEnviS.
Elles sont portées par au moins 2 unités de la FR et ont bénéficié des services des plateformes de celle-ci.


Piola, F., Bellvert, F., Meiffren, G., Rouifed, S., Walker, V., Comte, G., Bertrand, C. 2013. Invasive Fallopia x bohemica interspecific hybrids display different patterns in secondary metabolites. Ecoscience. 20 : 230-239

Mermillod-Blondin, F., Foulquier, A., Gilbert, F., Navel, S., Montuelle, B., Bellvert, F., Comte, G., Grossi , V., Fourel, F., Lecuyer, F., Simon, L., 2013 - Benzo(a)pyrene inhibits the role of the bioturbator Tubifex tubifex in river sediment biogeochemistry. Science of the Total Environment 450-451 : 230–241.

Bigot T, Daubin V, Lassalle F, Perrière G (2013) TPMS : a set of utilities for querying collections of gene trees BMC Bioinformatics, vol. 14 pp.1-9.

Thakur S, Normand P, Daubin V, Tisa L S, Sen A (2013). Contrasted evolutionary constraints on secreted and non-secreted proteomes of selected Actinobacteria. BMC Genomics, vol. 14 pp.474-474.

Duponnois R, Ramanankierana H, Hafidi M, Baohanta R, Baudoin E, Thioulouse J, Sanguin H, Ba A, Galiana A, Bally R, Lebrun M, Prin Y. Native plant resources to optimize the performances of forest rehabilitation in Mediterranean and tropical environment : some examples of nursing plant species that improve the soil mycorrhizal potential. Comptes rendus biologies, vol. 336 pp.265-272

Almario, J., C. Prigent-Combaret, D. Muller, Y. Moënne-Loccoz. 2013. Effect of clay mineralogy on iron bioavailability and rhizosphere transcription of 2,4-diacetylphloroglucinol biosynthetic genes in biocontrol Pseudomonas protegens. Molecular Plant-Microbe Interaction 26:566-574

Chamam, A., H. Sanguin, F. Bellvert, G. Meiffren, G. Comte, F. Wisniewski−Dyé, C. Bertrand and C. Prigent−Combaret. Plant secondary metabolite profiling evidences strain−dependent effect in the Azospirillum−Oryza sativa association. Phytochem. 87:65-77

Colinon C, Deredjian A, Hien E, Brothier E, Bouziri L, Cournoyer B, Hartman A, Henry S, Jolivet C, Ranjard L, Nazaret S. 2013. Detection and enumeration of Pseudomonas aeruginosa in soil and manure assessed by an ecfX qPCR assay. J Appl Microbiol. Jun ;114(6):1734-49

Grigulis K, Lavorel S, Krainer U, Legay N, Baxendale C, Dumont M, Kastl E, Arnoldi C, Bardgett R, Poly F, Pommier T, Schloter M, Tappeiner U, Bahn M, Clément JC. 2013. Combined influence of plant and microbial functional traits on ecosystem processes in mountain grasslands J. Ecol. 101 (1) : 47-57

Le Roux X., Schmid B., Poly F., Barnard R.L., Niklaus P.A., Guillaumaud N., Habekost M., Oelmann Y., Philippot L., Salles J., Schloter M., Steinbeiss S. & Weigelt A. 2013. Soil environmental conditions and buildup of microbial communities mediate the effect of grassland plant diversity on nitrifying and denitrifying enzyme activities. PLOS One http://dx.plos.org/10.1371/journal.pone.0061069

Michalet S., Pharm. D., Rohr J., Warshan D., Bardon C., Roggy J.C., Domenach A.M., Czarnes S., Pommier T., Combourieu B., Guillaumaud G., Bellvert F., Comte G., Poly F. 2013. Phytochemical analysis of mature tree root exudates in situ and their role in shaping soil microbial communities in relation to tree N-acquisition strategy. Plant Physiol. Biochem. 72 : 169-177.

Almario J, Moënne-Loccoz Y, Muller D. 2013. Monitoring of the relation between 2,4-diacetylphloroglucinol-producing Pseudomonas and Thielaviopsis basicola populations by real-time PCR in tobacco black root-rot suppressive and conducive soils. Soil Biology and Biochemistry 57 : 144-155

Almario, J., Kyselková, M., Kopecký, J., Ságová-Marečková, M., Muller, D, Grundmann, G.L., Moënne-Loccoz, Y. (2013) Assessment of the relationship between geologic origin of soil, rhizobacterial community composition and soil receptivity to tobacco black root rot in Savoie region (France). Plant and Soil, 371, 397-408.

Couillerot O, Ramírez-Trujillo A, Walker V, von Felten A, Jansa J, Maurhofer M, Défago G, Prigent-Combaret C, Comte G, Caballero-Mellado J, Moënne-Loccoz Y. 2013. Comparison of prominent Azospirillum strains in Azospirillum-Pseudomonas-Glomus consortia for promotion of maize growth. Appl Microbiol Biotechnol. May ;97(10):4639-49.

Lehembre, F., Doillon, D., David, E., Perrotto, S., Baude, J., Foulon, J., Harfouche, L., Vallon, L., Poulain, J., Da Silva, C., Wincker, P., Oger-Desfeux, C., Richaud, P., Colpaert, J.V., Chalot, M., Fraissinet-Tachet, L., Blaudez, D. and Marmeisse, R. (2013) Soil metatranscriptomics for mining eukaryotic heavy metal resistance genes. Environ. Microbiol., 15, 2829-2840.

Walker, V., M. Bruto, F. Bellvert, R. Bally, D. Muller, C. Prigent-Combaret, Y. Moënne-Loccoz, and G. Comte. 2013. Unexpected phytostimulatory behavior for Escherichia coli and Agrobacterium tumefaciens model Strains. Molecular Plant-Microbe Interaction 26:495-502

Evrard, E., Devaux, A., Bony, S., Cachot, J., Charrier, G., Quiniou, L., Laroche, J., 2013 - Responses of juvenile European flounder (Platichthys flesus) to multistress in the Vilaine estuary, during a 6-month survey. Environmental Science and Pollution Research, 20 : 676-689.

Laroche J., Gauthier, O., Quiniou, L., Devaux, A., Bony, S., Evrard, E., Cachot, J., Chérel, Y., Larcher, T., Riso, R., Pichereau, V., Devier, H., Budzinski, H., 2013 - Variation patterns in individual fish responses to chemical stress among estuaries, seasons and genders : the case of the European flounder (Platichthys flesus) in the Bay of Biscay. Environmental Science and Pollution Research, 20 : 738-748.

Oudot-Canaff J, Bornette G, Viricel M R, Piola F, Mousset S, Martel E. The short-term impact of wetland restoration on the genetic diversity of a predominantly clonal plant species, Aquatic Botany, vol. 110 pp.16-23

Foray V, Desouhant E, Voituron Y, Larvor V, Renault D, Colinet H, Gibert P. Does cold tolerance plasticity correlate with the thermal environment and metabolic profiles of a parasitoid wasp ?, Comparative Biochemistry and Physiology A-Molecular & Integrative Physiology, vol. 164 pp.77-83.

Rey B, Roussel D, Rouanet J-L, Duchamp C ; Differential effects of thyroid status on regional H2O2 production in slow- and fast-twitch muscle of ducklings, Journal of Comparative Physiology B-Biochemical Systemic and Environmental Physiology, vol. 183 pp.135-143.

Teulier, L., Tornos, J., Rouanet, J.L., Rey, B., Roussel, D., 2013 - Metabolic response to lipid infusion in fasting winter-acclimatized king penguin chicks (Aptenodytes patagonicus). Comparative Biochemistry and Physiology, Part A 165 : 1–6.

Merville A., Venner S., Henri H., Vallier A., Menu F., Vavre F., Heddi A., Bel-Venner M.C., 2013. Endosymbiont diversity among sibling weevil species competing for the same resource. BMC Evolutionary Biology, 13 : 28

André, A., Weiner, A., Quillévéré, F., Aurahs, R., Morard, R., Douady, C.J., de Garidel-Thoron, T., Escarguel, G., de Vargas, C., Kucera, M., 2013. The cryptic and the apparent reversed : lack of genetic differentiation within the morphologically diverse plexus of the planktonic foraminifer Globigerinoides sacculifer. Paleobiology 39, 21-39.

Lotteau S, Ducreux S, Romestaing C, Legrand C, Van Coppenolle F. Characterization of functional TRPV1 channels in the sarcoplasmic reticulum of mouse skeletal muscle. PLoS One, 8:e58673

Prunier, J. G., Kaufmann, B., Fenet, S., Picard, D., Pompanon, F., Joly, P., Lena, J.P., 2013 - Optimizing the trade-off between spatial and genetic sampling efforts in patchy populations : towards a better assessment of functional connectivity using an individual-based sampling scheme. Molecular Ecology, 22 : 5516–5530.

Capderrey, C., Datry, T., Foulquier, A., Claret, C., Malard, F., 2013 - Invertebrate distribution across nested geomorphic features in braided-river landscapes. Freshwater Science, 32(4) : 1188-1204.

Eme, D., Malard, F., Konecny-Dupré, L., Lefébure, T., Douady, C.J., 2013 - Bayesian phylogeographic inferences reveal contrasting colonization dynamics among European groundwater isopods. Molecular Ecology.

Luquet, E., Léna, J.P., David, P., Prunier, J., Joly, P., Lengagne, T., Perrin, N., Plénet, S., 2013 - Within- and among-population impact of genetic erosion on adult fitness-related traits in the European tree frog Hyla arborea. Heredity, 110 : 347–354.

Morvan, C., Malard, F., Paradis, E., Lefébure, T., Konecny-Dupré, L ., Douady, C.J., 2013 - Timetree of Aselloidea Reveals Species Diversification Dynamics in Groundwater. Systematic Biology, 62(4) : 512–522.

Capderrey, C., Kaufmann, B., Jean, P., Malard, F., Konecny-Dupré, L., Lefébure T., Douady, C.J., 2013 - Microsatellite Development and First Population Size Estimates for the Groundwater Isopod Proasellus walteri. PLoS One, 8(9) e76213

BARTIROMO A., GUIGNARD G., BARONE – LUMAGA M.R., BARATTOLO F., CHIODINI G., AVINO R., GUERRIERO G., BARALE G. (2013). The cuticle micromorphology of in situ Erica arborea L. exposed to long-term volcanic gases in Phlegrean Fields, Campania, Italy. Environmental and Experimental Botany (87) 197-206

Del Fueyo G.M., Guignard G., Vilar de Seoane L., Archangelsky S., 2013 - Leaf cuticle anatomy and the ultrastructure of Ginkgoites ticoensis Arch. From the Aptian of Patagonia. International J. of Plant Sciences, 174 : 406-424.

Morard, R., Quillévéré, F., Escarguel, G., de Garidel-Thoron, T., de Vargas, C., Kucera, M., 2013. Ecological modeling of the temperature dependence of cryptic species of planktonic foraminifera in the Southern Hemisphere. Palaeogeography, Palaeoclimatology, Palaeoecology, 391, 13-33.

Bartiromo A. 2013 - Plant remains from the Lower Cretaceous Fossil-Lagerstätte of Petraroja, Benevento, southern Italy. Cretaceous Research, 46 : 65-79.

WANG Y., YANG X., GUIGNARD G., DENG S., TIAN N., JIANG Z., 2009 - The fossil gleicheniaceous ferns of China : Biodiversity, systematics, spore ultrastructure and evolution. Review of Palaeobotany and Palynology, 156 : 134-156.

Lerosey-aubril, R., ortega-hernandez, J., kier, C., bonino, E. 2013. occurrence of the ordovician-type aglaspidid Tremaglaspis in the cambrian weeks formation (utah, usa). geological magazine, 150 (5).

Reboulet, S., giraud, F., coloMbie, C., carpentier, A. 2013. Integrated stratigraphy of the Lower and Middle Cenomanian in a Tethyan section (Blieux, southeast France) and correlations with Boreal basins. cretaceous research, 40

Angst, D., buffetaut, E., lecuyer, C., amiot, R. 2013. “terror birds” (phorusrhacidae) from the eocene of europe imply trans-tethys dispersal. plos one, 8(11).

Chirat, R., moulton, D.E., goriely, A. 2013. Mechanical basis of morphogenesis and convergent evolution of spiny seashells. PNAS, 11 (15).

Gomes rodrigues, H., etal (incl. viriot, L.). 2013. Roles of dental development and adaptation in rodent evolution. nature communications, 4 : 2504

Busnardo, R., granier, B., clavel, B., charollais, J. 2013. Ammonitofaune du barrémien de la coupe de l’estellon (baronnies, france) : résultats biostratigraphiques préliminaires. carnets de géologie, cg2013_A03

Charollais, J., clavel, B., granier, B., busnardo, R., conrad, M.A. 2013. Discussion of the paper by godet et al. 2011, entitled « reconciling strontium-isotope and k-ar ages with biostratigraphy : the case of the urgonian platform, early cretaceous of the jura moutains, western switzerland” (swiss journal of geosciences, 104, 147-160. swiss journal of geosciences, 106.

Gaillard, C., olivero, D., chebance, M. 2012. Probable aestivation burrows from the Eocene/Oligocene transition in south-eastern France and their palaeoenvironmental implications.

Maridet, O., hugueney, M., costeur, L. 2013. The mammalian assemblage of mazan (vaucluse, france) and its position in the early oligocene european palaeobiogeography. swiss journal of geosciences, 106

Mourer-chauviré, C. 2013. New data concerning the familial position of the genus euronyctibius (aves, caprimulgiformes) from the paleogene of the phosphorites du quercy, france. paleontological journal, 47(11).

COSTECHAREYRE D., CHICH J.-F., STRAUB J.-M., RAHBÉ Y., CONDEMINE G. Transcriptome of Dickeya dadantii infecting Acyrthosiphon pisum reveals a strong defense against antimicrobial peptides. PLoS One 8(1):e54118.

Subbaiah EV, Royer C, Kanginakudru S, Satyavathi VV, Babu AS, Sivaprasad V, Chavancy G, Darocha M, Jalabert A, Mauchamp B, Basha I, Couble P, Nagaraju J. Engineering silkworms for resistance to baculovirus through multigene RNA interference. Genetics, 193:63-75.

THABET S., WEISS-GAYET M., DAPPOZZE F., COTTON P., GUILLARD C. (2013) Photocatalysis on yeast cells : Toward targets and mechanisms. Applied Catalysis B : Environ 140-141 : 169-178

Baltazar J., Da Silveira , Rajchenberg M., 2013 – Asterostromella roseola Bres. Ex Rick is combined in Dendrocorticium (Corticiae, Agaricomycetes). Phytotaxa, 104 1, 7 : 49-52.

Thiébaut M., Labussière F., 2013 - Les Bétoines de Jordan et Fourreau : culture et typification. Candollea, 68(2) : 285-299.

Quillévéré, F., Morard, R., Escarguel, G., Douady, C.J., Ujiié, Y., de Garidel-Thoron, T., de Vargas, C., 2013. Global scale same-specimen morpho-genetic analysis of Truncorotalia truncatulinoides : A perspective on the morphological species concept in planktonic foraminifera, Palaeogeography, Palaeoclimatology, Palaeoecology, 391, 2-12.

Archila F., Chiron G., Szlachetko D., 2013 – Additions dans le genre Teuscheria (Orchidaceae, Bifrenariinae). Richardiana, XIII : 257-266.

Archila F., Chiron G., 2013 – Mise à jour de la liste de Scaphyglottis (Orchidaceae, Laeliinae) au Guatemala, avec une nouvelle espèce. Richardiana, XIII : 177-183.

Archila F., Chiron G., 2013 – New species of Sobarlia for Guatemala. Guatemalensis, 16(2) : 48-102.

Archila F., Chiron G., Szlachetko D., 2013 – Dracontia tenebrosa (Orchidaceae, Pleurothallidinae), nueva especie mesoamericana. Guatemalensis, 16(1) : 27-35.

Archila F., Chiron G., Szlachetko D., 2013 – Etude de populations pour une meilleure compréhension du genre Restrepia (Orchidacea) au Guatemala. Richardiana, XIII : 230-243.

Archila F., Chiron G., Szlachetko D., 2013 – Javiera, un nouveau genre d’Orchidacea néotropicales. Richardiana, XIV : 91-101.

Archila F., Szlachetko D., Baranow P., Chiron G., 2013 – The genus Sobralia in Guatemala. Guatemalensis, 16(2) : 2-47.

Aubert S., Bec S., Choler Ph., Douzet R., Michalet R., Thuillet W., 2011 – Découverte botanique de la région du Lautaret et du Briançonnais. Partie I, Eléments d’écologie alpine, Les cahiers illustrés du Lautaret, n° 2-1 : 8O p.

Chiron G., 2013 – Contribution à l’inventaire de la flore d’Orchidaceae d’Espirito Santo (Brésil). Richardiana, XIII : 198-207.

Chiron G., 2013 – Contribution à la flore d’Orchidées d’Espirito Santo (Brésil) : notes taxinomiques dans le genre Epidendrum. Richardiana, XIV : 39-53.

Chiron G., 2013 – Notes taxonomiques pour le genre Stelis (Orchidaceae, Pleurothallidinae) en Espirito Santo (Brésil). Richardiana, XIII : 125-132.

Chiron G., de Jesus F.J., Bolsanello R.X., 2013 – Une nouvelle espèce d’Anathallis (Orchidaceae) du Brésil. Richardiana, XIII : 295-302.

Chiron G., Guiard J., Bolsanello R.X., 2013 - Trois nouvelles espèces de Pleurothallidinae (Orchidaceae) d’Espirito Santo du Brésil, Richardiana, XIII : 208-219.

Filipa M., Baiano G., Baglivo A., Agnello C., 2013 – Helvella semiobruta : rivalutazione di una specie mediterranea. Rivista di Micologia, 3 : 195-210.

Lopez E., Devesa J. A., 2013 – Estudio de Centaurea sect. Acrocentron (Cass.) DC. (Asteraceae) en la peninsula iberica y Baleares. Lagascalia, 33 : 75-173.

Marçal S., Chiron G., 2013 – Orchidaceae : trois nouveaux taxons de Bahia (Brésil). Richardiana, XIV : 3-18.

Nakasone K.K., 2013 – Taxonomy of Epithele (Polyporales, Basidiomycota). Sydowia, 65 (1) : 59-112.

Philippe M., 201 3- Recueil de données naturalistes : Circaea alpina. Bull. Soc. Linnéenne Lyon, 82(1-2) : 59.

Pujadas Siva A.J., 2013 – El genero Erigeron L. (Asteraceae) en la flora Iberica. Acta Botanica Malacitana, 38 : 241-253.

Spirin V., Vlasak J., Niemela T., Miettinen O., 2013 - What is Antrodia sensu stricto ? Mycologia, 105(6) : 1555-1576.

Turner I.M., 2013 – Notes on the names of two species of Campanula (Campanulaceae) validated by R.H. Beddome. Edinburgh Journal of Botany, 70(1) : 1-5.

Van Vooren N., 2012 – Contribution à l’inventaire des Pézizales (Fungi, Ascomycota) du Lyonnais. 1è partie : situation géographique, milieux, historique et synthèse. Bull. Soc. Linnéenne Lyon, 81(7-8) : 195-204.

Archila F., Chiron G., Veliz M., 2013 – Encyclia rodolfoi Encyclia schaeferi, nuevas especies para la su_btribu Laeliinae. Guatemalensis, 16(1) : 1-11.


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