mercredi 14 janvier 2015

Les publications illustrent les collaborations scientifiques au sein de la FR BioEnviS.
Elles sont portées par au moins 2 unités de la FR et ont bénéficié des services des plateformes de celle-ci.

Popovici J, Bertrand C, Jacquemoud D, Bellvert F, Fernandez MP, Comte G & Piola F. 2011. An Allelochemical from Myrica gale with Strong Phytotoxic Activity against Highly Invasive Fallopia x bohemica Taxa. Molecules 16, 2323-2333.


LASSALLE, F., CAMPILLO, T., VIAL, L., BAUDE, J., COSTECHAREYRE, D., CHAPULLIOT, D., SHAMS, M., ABROUK, D., LAVIRE, C., OGER, C., HOMMAIS, F., GUÉGUEN, L., DAUBIN, V., MULLER, D., NESME, X. (2011) Genomic species are ecological species as revealed by comparative genomics in Agrobacterium tumefaciens. Genome Biol Evol 3:762-781.

COUPAT-GOUTALAND B, BERNILLON D, GUIDOT A, PRIOR P, NESME X, BERTOLLA F. 2011 Ralstonia solanacearum virulence increased following large interstrain gene transfers by natural transformation. Mol Plant Microbe Interact. 24(4):497-505.

Vergnes M, Ginevra C, Kay E, Normand P, Thioulouse J, Jarraud S, Maurin M, Schneider D. Insertion Sequences as Highly Resolutive Genomic Markers for Sequence Type 1 Legionella pneumophila Paris, Journal of Clinical Microbiology, vol. 49 pp.315-324.

Lélu M., Gilot-Fromont E., Aubert D., Richaume-Jolion A., Afonso E., Dupuis E., Gotteland C., Marnef F., Poulle M.L., Dumètre A., Thulliez P., Dardé M.L. & Villena I. 2011. Development of a sensitive method for Toxoplasma gondii oocyst extraction in soil. Vet. Parasitol. 183, 59– 67.

Combes-Meynet, E., J.F. Pothier, Y. Moënne-Loccoz, C. Prigent-Combaret. 2011. The Pseudomonas secondary metabolite 2,4-diacetylphloroglucinol is a signal inducing rhizoplane expression of Azospirillum genes involved in plant-growth promotion. Molecular Plant-Microbe Interactions 24:271-284

Couillerot, O., E. Combes-Meynet, J.F. Pothier, F. Bellvert, E. Challita, M.-A. Poirier, R. Rohr, G. Comte, Y. Moënne-Loccoz, C. Prigent-Combaret. 2011. Role of the antimicrobial compound 2,4-diacetylphloroglucinol in the impact of biocontrol Pseudomonas fluorescens F113 on Azospirillum brasilense phytostimulators. Microbiology 157:1694-1705

Attard E., Recous S., Chabbi A., De Berrangers C., Guillaumaud N., Labreuche S., Philippot L., Schmid B. & Le Roux X. 2011. Soil environmental conditions rather than denitrifier abundance and diversity drive potential denitrification after changes in land uses. Global Change Biol. 17 : 1975–1989.

Dassonville N., Guillaumaud N., Piola F., Meerts P. & Poly F. 2011. The niche construction by the invasive Asian knotweeds (species complex Fallopia) : impact on activity, abundance and community structure of denitrifiers and nitrifiers. Biol. Invasions 13 : 1115-1133.

Kopecky, J., Kyselková, M., Omelka, M., Cermak, L., Novotna, J., Grundmann, G.L., Moënne-Loccoz, Y. and Ságová-Marečková, M. (2011) Actinobacterial community dominated by a distinct clade in acidic soil of a waterlogged deciduous forest. FEMS Microbiol. Ecol., 78, 386-394.

Urbanová M, Kopecký J, Valášková V, Ságová-Marečková M, Elhottová D, Kyselková M, Moënne-Loccoz Y, Baldrian P. 2011. Development of bacterial community during spontaneous succession on spoil heaps after brown coal mining. FEMS Microbiol Ecol. Oct ;78(1):59-69.

Hocher V, Alloisio N, Auguy F, Fournier P, Doumas P, Pujic P, Gherbi H,Queiroux C, Da Silva C, Wincker P, Normand P, Bogusz D. 2011. Transcriptomics of actinorhizal symbioses reveals homologs of the whole common symbiotic signaling cascade. Plant Physiol. Jun ;156(2):700-11

Zouache K, Raharimalala FN, Raquin V, Tran-Van V, Raveloson LH, Ravelonandro P, Mavingui P. 2011. Bacterial diversity of field-caught mosquitoes, Aedes albopictus and Aedes aegypti, from different geographic regions of Madagascar. FEMS Microbiol Ecol. Mar ;75(3):377-89.

Popovici J, Walker V, Bertrand C, Bellvert F, Fernandez MP and Comte G. 2011. Strain specificity in the Myricaceae–Frankia symbiosis is correlated to plant root phenolics. Functional Plant Biology, 2011, 38, 682–689.

Walker, V., C. Bertrand, F. Bellvert, Y. Moënne-Loccoz, R. Bally, G. Comte. 2011. Host plant secondary metabolite profiling shows complex, strain-dependent response of maize to Azospirillum PGPR. New Phytologist 189:494-506

Billoir, E., Delhaye, H., Clément, B., Delignette-Muller, M.L., Charles, S., 2011 - Bayesian modelling of daphnid responses to time-varying cadmium exposure in laboratory aquatic microcosms. Ecotoxicology and Environmental Safety, 74 : 693-702.

Lopes C, Perga ME, Peretti A, Roger MC, Persat H, Babut M. Is PCBs concentration variability between and within freshwater fish species explained by their contamination pathways ?, Chemosphere, vol. 85 pp.502-508.

Rey B, Roussel D, Teulier L, Eyenga P, Degletagne C, Belouze M, Duchamp C. Functional argument for the existence of an avian nitric oxide synthase in muscle mitochondria : Effect of cold acclimation, FEBS Letters, vol. 585 pp.173-177.

Chardonnet F, Delava E, Foray V, Multeau C, Vigneron A, Mondy N. The French touch in entomological biology : synthesis of the “16th Colloque Biologie de l’Insecte”, Annals de la société entomologique de France, vol. 47 pp.524-527

Belouze M, Sibille B, Rey B, Roussel D, Romestaing C, Teulier L, Baetz D, Koubi H, Servais S, Duchamp C. Leanness of Lou/C rats does not require higher thermogenic capacity of brown adipose tissue, Physiology & Behavior, vol. 104 pp.893-899

Vellozo A.F., Véron A.S., Baa-Puyoulet P., Huerta-Cepas J., Cottret L., Febvay G., Calevro F., Rahbé Y., Douglas A.E., Gabaldón T., Sagot M.F., Charles H., Colella S., 2011. CycADS : an annotation database system to ease the development and update of BioCyc databases. Database : The Journal of Biological Databases and Curation, 2011 : bar008 (11 p.).

Blavet N., Charif D., Oger-Desfeux C., Marais GAB and Widmer A. 2011. Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database. BMC Genomics. 12:376

Palmeira, L., Penel, S., Lotteau, V., Rabourdin-Combe, C. and Gautier, C. (2011) PhEVER : a database for the global exploration of virus-host evolutionary relationships. Nucleic Acids Res., 39, D569-575.

Morard, R., Quillévéré, F., Douady, C., de Vargas, T., de Garidel-Thoron, T., Escarguel, G., 2011. Worldwide Genotyping in the planktonic foraminifer Globoconella inflata : implications for life history and paleoceanography, PLoS ONE 6(10) : e26665.

Luquet, E., Vorburger, C., Hervant, F., Joly, P., Kaufmann, B., Schmeller, D. S., Lena, J. P., Grolet, O., Konecny, L., Plenet, S., 2011 - Invasiveness of an introduced species : the role of hybridization and ecological constraints. Biological Invasions, 13(8) : 1901-1915.

Luquet, E., David, P., Lena, J. P., Joly, P., Konecny, L., Dufresnes, C., Perrin, N., Plenet, S., 2011 - Heterozygosity-fitness correlations among wild populations of European tree frog (Hyla arborea) detect fixation load. Molecular Ecology, 20(9) : 1877-1887.

Luquet, E., Léna, J.P., David, P., Joly, P., Lengagne, T., Perrin, N., Plénet, S., 2011 - Consequences of genetic erosion on fitness and phenotypic plasticity in European tree frog populations (Hyla arborea). Journal of Evolutionary Biology, 24 : 99-110.

Calvignac S., Konecny L., Malard F., Douady C.J. 2011. Preventing the pollution of mitochondrial datasets with nuclear mitochondrial paralogs (numts). Mitochondrion, 11 : 246-254.

Dufresnes, C., Luquet, E., Plenet, S., Stöck, M., Perrin, N., 2011 - Polymorphism at a Sex-Linked Transcription Cofactor in European Tree Frogs (Hyla arborea) : Sex-Antagonistic Selection or Neutral Processes ? Evolutionary Biology, 38(2) : 208-213.

Ouaja M., Barale G., Philippe M., Ferry S., 2011 – Occurrence of an in situ grove in the Aptian Douiret Formation, Tataouine area, South Tunisia. Geobios, 44 : 473-479.

Alméras, Y., Fauré, Ph., Corna, M. 2011. La zonation du Lias inférieur par les brachiopodes. Compléments apportés par le Jura méridional (Bugey, France) et le stratotype du Sinémurien. Revue de paléobiologie 30 (2).

Busnardo, R., granier, B. 2011. Aptian ammonites of abu dhabi (united arab emirates). carnets de geologie / notebooks on geology, letter CG2011/04

Enay, R. 2011. ammonites jurassiques (toarcien, bajocien) de l’oman central (haushi-huqf) et des exotiques du nord de l’oman : implications pour la paléoécologie et la paléobiogéographie. Revue de paléobiologie, 30 (1).

Enay, R. 2011. Thamboceras Douvillé (Ammonitina, Thamboceratidae). Un genre aravlique en Normandie, singularité par rapport aux formes d’Arabie Saoudite et du Sinaï, Egypte. Bulletin de la Société Géologique de Normandie et des Amis du Museum du Havre, 98

Enay, R. 2011. toarcian and bajocian ammonites from the haushi-huqf massif of southwestern oman and the hawasina nappes of the oman mountains : implications for paleoecology and paleobiogeography. geoarabia, 16 (4)

Fovet, W., faure, M. guerin, C. 2011. Hippopotamus guldbergi n. sp. : révision du statut d’Hippopotamus madagascariensis Guldberg, 1883, après plus d’un siècle de malentendus et de confusions taxonomiques. Zoosystema, 33 (1).

Gaillard, C. 2011. A giant limulid trackway (Kouphichnium lithographicum) from the lithographic limestones of Cerin (Late Kimmeridgian, France) : ethological and environmental implications. Swiss Journal of Geosciences, 104 (1)

Gaillard, C. 2011. Ichnotaxonomy and ichnospecies. Comptes Rendus Palevol 10 (2-3).

Gaillard, C., neraudeau, D., thierry, J. 2011. Tithonia oxfordiana, a new irregular echinoid associated with Jurassic seep deposits in south-east France. Palaeontology, 54 (4).

Guerin, C. 2011. Les Rhinocerotidae (Mammalia, Perissodactyla) miocènes et pliocènes des Tugen Hills (Kenya). estudios geologicos, 67 (2)

Hugueney, M., bulot, C. 2011. Les petits Mammifères du Burdigalien (MN3 ; Miocène) d’Estrepouy (Gers, France) : liste faunique actualisée. estudios geologicos, 67 (2).

Hugueney, M., maridet, O. 2011. Early Miocene soricids (Insectivora, Mammalia) from Limagne (Central France) : New systematic comparisons, updated biostratigraphic data and evolutionary implications. Geobios, 44 (2-3

Lefebvre, B., et al. 2011. Les niveaux à échinodermes de Bou Nemrou, un gisement à préservation exceptionnelle de l’Ordovicien supérieur du Tafilalt occidental (Maroc). Mésogée, 64/2008-65/2009

Lopez-antonanzas, R., mein, P. 2011. First detailed description of Hispanomys decedens (Rodentia) from the Middle Miocene of La Grive-Saint Alban (France). Swiss Journal of Geosciences 104 (2).

Louchart, A., mourer-chauviré, C. 2011. The dodo was not so slim : leg dimensions and scaling to body mass. Naturwissenschaften 98 (4).

Louchart, A., TOurment, N., carrier, J. 2011. the earliest known pelican reveals 30 million years of evolutionary stasis in beak morphology. journal of ornithology, 152(1).

Mayr, G., alvarenga, H., mourer-chauviré, C. 2011. Out of Africa : Fossils shed light on the origin of the hoatzin, an iconic Neotropic bird. Naturwissenschaften 98 (11).

Mourer-chauviré, C., pickford, M., senut, B. 2011. the first palaeogene galliform from africa. journal of ornithology, 152 (3).

Mourer-chauviré, C., tabuce, R., mhaboubi, M.H., adaci, M., bensalah, M. 2011. A Phororhacoid bird from the Eocene of Africa. Naturwissenschaften 98 (10).

Olivier, N., colombie, C., pittet, B., lathuiliere, B. 2011. Microbial carbonates and corals on the marginal French Jura platform (Late Oxfordian, Molinges section). Facies, 57 (3).

Pavia, M., mourer-chauviré, C. 2011. Redescription of Tyto sanctialbani Lydekker, 1893 (Aves, Strigiformes), from its Type Locality of La Grive-Saint-Alban (Middle Miocene, France). journal of vertebrate paleontology, 31 (5).

Pickford, M., mein, P. 2011. New Pedetidae (Rodentia : Mammalia) from the Mio-Pliocene of Africa. Estudios Geologicos 67 (2).

Schlogl, J., et al. 2011. Aturia from the Miocene Paratethys : An exceptional window on nautilid habitat and lifestyle. Palaeogeography, Palaeoclimatology, Palaeoecology 308 (3-4).

Chouabe C, Eyraud V, Da Silva P, Rahioui I, Royer C, Soulage C, Bonvallet R, Huss M, Gressent F. New mode of action for a knottin protein bioinsecticide : pea albumin 1 subunit b (PA1b) is the first peptidic inhibitor of V-ATPase. J Biol Chem. 2011, 286:36291-36296.

Login F., Balmand S., Vallier A., Vincent-Monégat C., Vigneron A., Weiss-Gayet M., Rochat D., Heddi A., 2011. Anti-microbial peptides keep insect endosymbionts under control. Science, 334 : 362-365.

Royer C, Briolay J, Garel A, Brouilly P, Sasanuma S, Sasanuma M, Shimomura M, Keime C, Gandrillon O, Huang Y, Chavancy G, Mita K, Couble P. Novel genes differentially expressed between posterior and median silk gland identified by SAGE-aided transcriptome analysis. Insect Biochem Mol Biol, 41:118-124.

Charles H., Balmand S., Lamelas A., Cottret L., Pérez-Brocal V., Burdin B., Latorre A., Febvay G., Colella S., Calevro F., Rahbé Y., 2011. A genomic reappraisal of symbiotic function in the aphid / Buchnera symbiosis : reduced transporter sets and variable membrane organisations. PLoS One, 6(12) : e29096

HOMMAIS F, ZGHIDI-ABOUZID O, OGER-DESFEUX C, PINEAU-CHAPELLE E, VAN GIJSEGEM F, NASSER W, REVERCHON S. (2011) lpxC and yafS are the Most Suitable Internal Controls to Normalize Real Time RT-qPCR Expression in the Phytopathogenic Bacteria Dickeya dadantii. PLoS One 6(5):e20269.

Lopez E., Devesa J.A., Arnelas I., 2011 – Taxonomic study in the Centaurea langei complex (Asteracea). Ann. Bot. Fennici, 48 : 1-12.

Vavre F, Mavingui P. Les bactéries symbiotiques d’arthropodes et de nématodes. De nouvelles alliées dans le contrôle des maladies infectieuses, Médecine Sciences, vol. 27 pp.953-958

Chiron G., Bolsanello R.X., 2011 – Autres nouveautés pour l’Espirito Santo dans le genre Acianthera (Orchidaceae). Richardiana, XI (2) : 84-97.

Chiron G., Bolsanello R.X., 2011 – Une nouvelle espèce de Pabstiella (Orchidaceae) d’Espirito Santo (Brésil). Richardiana, XII(1) : 4-9.

Chiron G., Sanson N., Bolsanello R.X., 2011 – Quatre nouvelles espèces d’Orchidacées du Brésil. Richardiana, XI(3) : 129-149.

Gottschlich G., Tison J-M., Malecot V., Rouillard T., 2011 – Typification of names in genus Hieracium based on original material of Alexis Jordan and Alexandre Boreau. Forum geobotanicum, 5 : 1-107.

Lopez E., Devesa J.A., 2011 – Revision taxonomica del complejo Centaurea alba L. (Asteraceae) en la Peninsula Iberica. Collectanea Botanica, 30 : 37-52.

Morales F.A., Chiron G., 2011 – Explorations botaniques au Guatemala. 2. Richardiana, XI(4) : 179-206.

Morales F.A., Chiron G., 2011 – Lycaste virginalis (Orchidaceae), reine des Lycaste. Richardiana, XI(3) : 105-121.

Sanson N., Chiron G., 2011 - Une nouvelle espèce de Thysanoglossa (Orchidaceae) d’Espirito Santo (Brésil). Richardiana, XI(2) : 61-66.


Articles de la rubrique

  • 2011