2010

mercredi 14 janvier 2015

Les publications illustrent les collaborations scientifiques au sein de la FR BioEnviS.
Elles sont portées par au moins 2 unités de la FR et ont bénéficié des services des plateformes de celle-ci.

Alloisio N, Queiroux C, Fournier P, Pujic P, Normand P, Vallenet D, Médigue C, Yamaura M, Kakoi K, & Kucho KI. 2010. The Frankia alni symbiotic transcriptome. MPMI 23 : 593-607.

Héry M, Sanguin H, Perez Fabiel S, Lefebvre X, Vogel TM, Paul E, Alfenore S. 2010. Monitoring of bacterial communities during low temperature thermal treatment of activated sludge combining DNA phylochip and respirometry techniques. Water Res. Dec ;44(20):6133-43.

Attard E., Poly F., Laurent F., Commeaux C., Terada A., Smets B.F., Recous S. & X. Le Roux. 2010. Shifts between Nitrospira- and Nitrobacter-like nitrite oxidizers underly the response of soil potential nitrite oxidation to changes in tillage practices. Env. Microbiol 12 : 315–326.

Costechareyre D, Rhouma A, Lavire C, Portier P, Chapulliot D, Bertolla F, Boubaker A, Dessaux Y, Nesme X. 2010. Rapid and efficient identification of Agrobacterium species by recA allele analysis : Agrobacterium recA diversity.Microb Ecol. Nov ;60(4):862-72.

Baudoin E, Lerner A, Mirza MS, El Zemrany H, Prigent-Combaret C, Jurkevich E, Spaepen S, Vanderleyden J, Nazaret S, Okon Y, Moënne-Loccoz Y. 2010. Effects of Azospirillum brasilense with genetically modified auxin biosynthesis gene ipdC upon the diversity of the indigenous microbiota of the wheat rhizosphere. Res Microbiol. Apr ;161(3):219-26.

Couillerot O, Poirier MA, Prigent-Combaret C, Mavingui P, Caballero-MelladoJ, Moënne-Loccoz Y. 2010. Assessment of SCAR markers to design real-time PCR primersfor rhizosphere quantification of Azospirillum brasilense phytostimulatory inoculants of maize. J Appl Microbiol. Aug ;109(2):528-38.

Couillerot, O., M.-L. Bouffaud, E. Baudoin, D. Muller, J. Caballero-Mellado, Y. Moënne-Loccoz. 2010. Development of a real-time PCR method to quantify the PGPR strain Azospirillum lipoferum CRT1 on maize seedlings. Soil Biology and Biochemistry 42:2298-2305

Schreiner K, Hagn A, Kyselková M, Moënne-Loccoz Y, Welzl G, Munch JC, Schloter M. 2010. Comparison of barley succession and take-all disease as environmental factors shaping the rhizobacterial community during take-all decline. Appl Environ Microbiol. 76(14):4703-12.

Kielbassa J, Delignette-Muller M-L, Pont D, Charles S. Application of a temperature-dependent von Bertalanffy growth model to bullhead Cottus gobio, Ecological Modelling, vol. 221 pp.2475-2481

Rey B, Spée M, Belouze M, Girard A, Prost J, Roussel D, Duchamp C. Oxygen recovery up-regulates avian UCP and ANT in newly hatched ducklings, Journal of Comparative Physiology B-Biochemical systemic and environmental physiology, vol. 180 pp.239-246.

Colson-Proch C., Morales A., Hervant F., Konecny L., Moulin C., Douady. C. J., 2010 - First cellular approach of the effects of global warming on groundwater organisms : a study of the HSP70 gene expression. Cell Stress and Chaperones 15 : 259-270.

Salin K, Teulier L, Rey B, Rouanet J-L, Voituron Y, Duchamp C, Roussel D. Tissue variation of mitochondrial oxidative phosphorylation efficiency in cold-acclimated ducklings, Acta Biochimica Polonica, vol. 57 pp.409-412.

Teulier L, Rouanet J-L, Letexier D, Romestaing C, Belouze M, Rey B, Duchamp C, Roussel D. Cold-acclimation-induced non-shivering thermogenesis in birds is associated with upregulation of avian UCP but not with innate uncoupling or altered ATP efficiency, The Journal of Experimental Biology, vol. 213 pp.2476-2482.

Degletagne C, Keime C, Rey B, de Dinechin M, Forcheron F, Chuchana P, Jouventin P, Gautier C, Duchamp C. Transcriptome analysis in non-model species : a new method for the analysis of heterologous hybridization on microarrays, BMC Genomics, vol. 11(344) pp.1-9

Arsène-Ploetze F, Koechler S, Marchal M, Coppée J-Y, Chandler M, Bonnefoy V, Brochier-Armanet C, Barakat M, Barbe V, Battaglia-Brunet F, Bruneel O, Bryan C G, Cleiss-Arnold J, Cruveiller S, Erhardt M, Heinrich-Salmeron A, Hommais F, Joulian C, Krin E, Lieutaud A, Lièvremont D, Michel C, Muller D, Ortet P, Proux C, Siguier P, Roche D, Rouy Z, Salvignol G, Slyemi D, Talla E, Weiss S, Weissenbach J, Médigue C, Bertin P N. Structure function and evolution of the Thiomonas spp. genome, PLoS Genetics, vol. 6 pp.e100859-e100859, DOI

Dubruille R, Orsi GA, Delabaere L, Cortier E, Couble P, Marais GA, Loppin B. Specialization of a Drosophila capping protein essential for the protection of sperm telomeres. Curr Biol., 20:2090-2099.

Cottret L., Milreu P.V., Acuna V., Marchetti-Spaccamela A., Stougie L., Charles H., Sagot M.F., 2010. Graph-based analysis of the metabolic exchanges between two co-resident intracellular symbionts, Baumannia cicadellinicola and Sulcia muelleri, with their insect host, Homalodisca coagulata. PLoS Computational Biology, 6(9) : e1000904.

Cottret L., Wildridge D., Vinson F., Barrett M.P., Charles H., Sagot M.F., Jourdan F., 2010. MetExplore : a web server to link metabolomic experiments and genome-scale metabolic networks. Nucleic Acids Research, 38 : W132-W137.

Degletagne, C., Keime, C., Rey, B., de Dinechin, M., Forcheron, F., Chuchana, P., Jouventin, P., Gautier, C. and Duchamp, C. (2010) Transcriptome analysis in non-model species : a new method for the analysis of heterologous hybridization on microarrays. BMC Genomics, 11, 344

Pellet, J., Tafforeau, L., Lucas-Hourani, M., Navratil, V., Meyniel, L., Achaz, G., Guironnet-Paquet, A., Aublin-Gex, A., Caignard, G., Cassonnet, P., Chaboud, A., Chantier, T., Deloire, A., Demeret, C., Le Breton, M., Neveu, G., Jacotot, L., Vaglio, P., Delmotte, S., Gautier, C., Combet, C., Deléage, G., Favre, M., Tangy, F., Jacob, Y., André, P., Lotteau, V., Rabourdin-Combe, C. and Vidalain, P.O. (2010) ViralORFeome : an integrated database to generate a versatile collection of viral ORFs. Nucleic Acids Res., 38, D371-378.

Marmonier, P., Luczyszyn, H., Creuzé des Châtelliers, M., Landon, N., Claret, C., Dole-Olivier, M.J., 2010 - Hyporheic flowpaths and interstitial invertebrates associated with stable and eroded river sections : interactions between micro- and meso-scales. Fundamental and Applied Limnology / Archiv für Hydrobiologie 176(4) 303-317.

Statzner, B., Douady, C. J., Konecny, L., Doledec, S. 2010 - Unravelling phylogenetic relationships among regionally co-existing species : Hydropsyche species (Trichoptera : Hydropsychidae) in the Loire River. Zootaxa, 2556 : 51-68.

Broquet, T., Angelone, S., Jaquiery, J., Joly, P., Léna, J.P., Lengagne, T., Plénet, S., Luquet, E., Perrin, N., 2010 - Genetic Bottlenecks Driven by Population Disconnection. Conservation Biology, 24(6) : 1596-1605.

Suan, G., Mattioli, E., Pittet, B., Lécuyer, C., Suchéras-Marx, B., Duarte, L.V., Philippe, M., Reggiani, L., Martineau, F., 2010. Secular environmental precursors to Early Toarcian (Jurassic) extreme climate changes. Earth and Planetary Science Letter, 290, 448-458.

Philippe, M., Billon-Bruyat, J.-P., Garcia-Ramos, J.C., Bocat, L., Gomez, B., Piñuela, L., 2010. New occurrences of the wood Protocupressinoxylon purbeckensis Francis : implications for terrestrial biomes in South-western Europe at the Jurassic/Cretaceous boundary. Palaeontology, 53, 201-214.

Grossi V., Yakimov M-M., Al Ali B., Tapilatu Y., Cuny P., Goutx M., La Cono V., Giuliano L. and Tamburini C. Hydrostatic pressure affects membrane and storage lipid compositions of the piezotolerant hydrocarbon-degrading Marinobacter hydrocarbonoclasticus strain #5. Environmental Microbiology, 12, (7), 2020–2033

Philippe, M., Cuny, G., Bashforth, A., 2010 - Ecpagloxylon mathiesenii gen. et sp. nov., a Jurassic wood from Greenland with several primitive angiosperm features. Plant systematics and evolutions, 287 : 153-165.

Chiron G., Guignard G., Barale G., 2010 – Contribution to the morphometry to the taxonomy of Baptistonia Barb. Rodr. (Orchidaceae). Candollea 65(1) : 45-62.

Renaud, S., Auffray, J.-C., De La Porte, S., 2010. Adaptation and plasticity in insular evolution of the house mouse mandible. BMC Evolutionary Biology, 10(1), art. 28.

Balter, V., Lécuyer, C., 2010. Determination of Sr and Ba partition coefficients between apatite from fish (Sparus aurata) and seawater : the influence of temperature. Geochimica et Cosmochimica Acta, 74, 3449- 3458.

Amiot, R., Buffetaut, E., Lécuyer, C., Wang, X., Boudad, L., Ding, Z.L., Fourel, F., Hutt, S., Martineau, F., Medeiros, M.A., Mo, J.Y., Simon, L., Suteethorn, V., Sweetman, S., Tong, H.Y., Zhang, F., Zhou, Z.H., 2010. Oxygen isotope evidence for semi-aquatic habits among spinosaurid theropods. Geology, 38, 139- 42.

Page, A., Wilby, P.R., Williams, M., Vannier, J., Davies, J.R., Waters, R.A., Zalasiewicz, J.A., 2010. Soft-part preservation in a bivalved arthropod from the Late Ordovician of Wales. Geological Magazine, 147, 242- 252.

Tóth, E., Görög, A., Lécuyer, C., Moissette, P., Balter, V., Monostori, M., 2010. Palaeoenvironmental reconstructions of the Middle Miocene Central Paratethys based on geochemical and palaeontological analyses of foraminifera, ostracods and gastropods. Geological Magazine, 147, 299-314.

Bernard, A., Lécuyer, C., Vincent, P., Amiot, R., Bardet, N., Buffetaut, E., Cuny, G., Fourel, F., Martineau, F., Mazin, J.-M., Prieur, A., 2010. Regulation of body temperature by some Mesozoic marine reptiles. Science, 328, 1379-1382.

Merceron, G., Escarguel, G., Angibault, A., Verheyden-Tixier, H., 2010. Can dental microwear textures record inter-individual dietary variations ? PloS One, 5(3), art. E9542

Van Roy, P., Orr, P.J., Botting, J.P., Muir, L.A., Vinther, J., Lefebvre, B., Hariri, K.E., Briggs, D.E.G., 2010. Ordovician faunas of Burgess Shale type. Nature, 465, 215-218.

Martin, J.E., 2010. Allodaposuchus Nopsca, 1928 (Crocodylia, Eusuchia), from the Late Cretaceous of southern France and its relationships to Alligatoroidea. Journal of Vertebrate Paleontology, 30, 756-767

Blondel, C., Merceron, G., Andossa, L., Mackaye, H.T., Vignaud, P., Brunet, M., 2010. Dental mesowear analysis of the late Miocene Bovidae from Toros-Menalla (Chad) and early hominid habitats in Central Africa. Palaeogeography, Palaeoclimatology, Palaeoecology, 292, 184-191.

Calandra, I., Göhlich, U.B., Merceron, G., 2010. Feeding preferences of Gomphotherium subtapiroideum from Sandelzhausen (Miocene, Molasse Basin, Germany) through life- and geological time : evidence from dental microwear analysis. Paläontologische Zeitschrift, 84, 205-215.

Caze, B., Merle, D., Pacaud, J-M., Saint-Martin, J-P. First systematic study using the variability of the residual colour patterns : the case of the Paleogene Seraphsidae (Mollusca, Gastropoda, Stromboidea). Geodiversitas, 32(3°, 417-477.

Charbonnier, S., Vannier, J., Hantzpergue, P., Gaillard, C., 2010. Ecological significance of the arthropod fauna from the Jurassic (Callovian) La Voulte Lagerstatte. Acta Palaeontologica Polonica, 55, 111-132

Coiffard, C., Gomez, B., 2010. The rise to dominance of the angiosperm kingdom : dispersal, habitat widening and evolution during the Late Cretaceous of Europe. Lethaia, 43, 164-169.

Esteve, J., Zamora, S., Gozalo, R. & Liñán, E. 2010. Sphaeroidal enrolment in middle Cambrian solenopleuropsine trilobites. Lethaia. 43, 478-493

Geraads, D., Alemseged, Z., Bobe, R., Reed, D. 2010. Nyctereutes lockwoodi, n. sp., a new Canid (Carnivora : Mammalia) from the Middle Pliocene of Dikika, Lower Awash, Ethiopia. Journal of Vertebrate Paleontology, 30(3), 981-987

Héran, M.-A., Lécuyer, C., Legendre, S., 2010. Cenozoic long-term terrestrial climatic evolution in Germany tracked by ?18O of rodent tooth phosphate. Palaeogeography, Palaeoclimatology, Palaeoecology, 285, 331- 342.

Maridet O., Hugueney M. & Heissig K. (2010) - New data about the diversity of Early Oligocene eomyids (Mammalia, Rodentia) in Western Europe. Geodiversitas, 32 : 221-254.

Mayr G., Rana R.S., Rose K.D., Sahni A., Kumar K., Singh L. & Smith T. (2010) – Quercypsitta-like birds from the early Eocene of India (Aves, ?Psittaciformes). Journal of Vertebrate Paleontology, 30 : 467 - 478.

Mein, P., Sénégas, F., Gommery, D., Ramanivosoa, B., Randrianantenaina, H., Kerloc’h, P., 2010. Nouvelles espèces subfossiles de rongeurs du Nord-Ouest de Madagascar. Comptes Rendus Palevol, 9, 101-112.

Mendes, M.M., Dinis, J.L., Gomez, B., Pais, J., 2010. Reassessment of the cheirolepidiaceous conifer Frenelopsis teixeirae Alvin et Pais from the Early Cretaceous (Hauterivian) of Portugal and palaeoenvironmental considerations. Review of Palaeobotany and Palynology, 161, 30-42.

Moissette, P., Cornée, J.-J., Koskeridou, E., 2010. Pleistocene rolling stones or large bryozoan nodules in a mixed siliciclastic-carbonate environment (Rhodes, Greece). Palaios, 25, 24-39.

Moissette, P., Cornée, J.-J., Mannaï-Tayech, B., Rabhi, M., André, J.-P., Koskeridou, E., Méon, H., 2010. The western edge of the Mediterranean Pelagian Platform : A Messinian mixed siliciclastic–carbonate ramp in northern Tunisia. Palaeogeography, Palaeoclimatology, Palaeoecology, 285, 85-103.

Salazar, C. Stinnesbeck, W., Quinzio-Sinn, L.A. 2010. Ammonites from the Maastrichian (Upper Cretaceous) Quiriquina Formation in central Chile. Neues Jarhbuch fur Geologie und Palaontologie Abhandlungen, 257(2), 181-236

Sender, L.M., Gomez, B., Diez, J.B., Coiffard, C., Martín-Closas, C., Villanueva-Amadoz, U., Ferrer, J., 2010. Ploufolia cerciforme gen. et comb. nov. : Aquatic angiosperm leaves from the upper Albian of north-eastern Spain. Review of Palaeobotany and Palynology, 161, 77-86.

Guérécheau, A., Ledevin, R., Henttonen, H., Deffontaine, V., Michaux, J.R., Chevret, P., Renaud, S., 2010. Seasonal variation in molar outline of bank voles : An effect of wear ? Mammalian Biology - Zeitschrift fur Saugetierkunde, 75, 311-319.

Kiel, S., Campbell, K.A., Gaillard, C., 2010. New and little known mollusks from ancient chemosynthetic environments . Zootaxa, 2390, 26-48.

Martin, J.E., Lauprasert, K., 2010. A new primitive alligatorine from the Eocene of Thailand : relevance of Asiatic members to the radiation of the group. Zoological Journal of the Linnean Society, 158, 608-628.

Renaud, S., Auffray, J.-C., 2010. Adaptation and plasticity in insular evolution of the house mouse mandible. Journal of Zoological Systematics and Evolutionary Research, 48, 138-150.

Urdy, S., Goudemand, N., Bucher, H., Chirat, R., 2010. Allometries and the morphogenesis of the molluscan shell : a quantitative and theoretical model. Journal of Experimental Zoology Part B : Molecular and Developmental Evolution, 314, 280-302.

Urdy, S., Goudemand, N., Bucher, H., Chirat, R., 2010. Growth-dependent phenotypic variation of molluscan shells : implications for allometric data interpretation. Journal of Experimental Zoology Part B : Molecular and Developmental Evolution, 314, 303-326.

Gourichon, L. 2010. L’avifaune fossile de l’aven de Romain-la-Roche. Revue de Paléobiologie, 29(2), 827-853.

Paupe, P. Guérin, C., Labe, B., Rousselières, F. 2010. Les mammouths (Proboscidea, Elephantidae) du Pléistocène moyen final de l’aven de Romain-la-Roche (Doubs, France). Revue de Paléobiologie, 29(2), 803-825

Costechareyre D., Dridi B., Rahbé Y., Condemine G., 2010. Cyt toxin expression reveals an inverse regulation of insect and plant virulence factors of Dickeya dadantii. Environmental Microbiology, 12 : 3290-3301.

Da Silva P, Rahioui I, Laugier C, Jouvensal L, Meudal H, Chouabe C, Delmas AF, Gressent F. Molecular requirements for the insecticidal activity of the plant peptide pea albumin 1 subunit b (PA1b). J Biol Chem., 285:32689-32694

Orsi G-A., Joyce E-F., Couble P., McKim K-S., Loppin B. Drosophila I-R hybrid dysgenesis is associated with catastrophic meiosis and abnormal zygote formation. J Cell Sci, 2010, 123, (Pt 20), 3515-24.

AL SAFADI R., WEISS-GAYET M., BRIOLAY J., M. AIGLE (2010) A polyploid population of Saccharomyces cerevisiae with separate sexes (dioecy). FEMS Yeast Research 10 : 757-768

Bouhallier F, Allioli N, Lavial F, Chalmel F, Perrard MH, Durand P, Samarut J, Pain B, Rouault JP. Role of miR-34c microRNA in the late steps of spermatogenesis. RNA. 2010 Apr ;16(4):720-31.

Iamonico D., 2010 – Malva subovata subsp. bicolour comb. stat. Nov. Ann. Bot. Fennici, 47 : 312-314.

Martínez-Azorín M., Crespo M. B., Juan A., 2010 - Taxonomic revision of Ornithogalum subg. Ornithogalum (Hyacinthaceae) in the Iberian Peninsula and the Balearic Islands. Plant Systematics and Evolution, 289(3-4) : 181–211.

Chun Y.J., Fumanal B., Laitung B., Bretagnolle F., 2010 – Gene flow and population admixture as the primary post-invasion processes in common ragweed (Ambrosia artemisiifolia) populations in France. New Phytologist, 185 : 1100-1107

Silva, R.A., Grossi, V., Olivera, N.L., Alvarez, H.M., 2010. Characterization of indigenous Rhodococcus sp. 602, a strain able to accumulate triacylglycerides from naphthyl compounds under nitrogen-starved conditions. Research in Microbiology, 161, 198-207.

Chihaoui A., Jaillard E., Latil J.L., Zghal I., Susperregui A.S., Touir J. & Ouali J. 2010. Stratigraphy of the Hameima and lower Fahdene Formations in the Tadjerouine area (Northern Tunisia). Journal of African Earth Sciences.

Wagner, J. (2010) : Pliocene to early Middle Pleistocene ursine bears in Europe : a taxonomic overview.- Journal of the National Museum (Prague), Natural History Series, 179 (20) : 197-215

Brinza L., Calevro F., Duport G., Gaget K., Gautier C., Charles H., 2010. Structure and dynamics of the operon map of Buchnera aphidicola sp. strain APS. BMC Genomics, 11 : 666, 16p.

Rey B, Roussel D, Romestaing P, Belouze M, Rouanet J-L, Desplanches D, Sibille B, Servais S, Duchamp C. Up-regulation of avian uncoupling protein in cold-acclimated and hyperthyroid ducklings prevents reactive oxygen species production by skeletal muscle mitochondria, BMC Physiol, vol. 10 pp.1-12.

Chiron G., 2010 – Aspects of the pollination syndrome in Baptistonia (Orchidaceae, Oncidiinae) with link to genus evolution. Revista Guatemalensis, 13(1) : 15-43.

Chiron G., Bolsanello R.X., 2010 – Notes sur un groupe de Pabstiella (Pleurothallinidinae, Orchidaceae). Richardiana, X( 2) : 45-81.

Chiron G., Bolsanello R.X., 2010 – Quatre taxons nouveaux pour l’Espirito Santo (Brésil) dans le morphogroupe « Acianthera saundersiana ». Richardiana X(4) : 198 -220.

Chiron G., Bolsanello R.X., 2010 – Une nouvelle espèce de Pabstiella (Orchidaceae, Pleurothallidinae) d’Espirito Santo (Brésil). Richardiana XI(1) : 28-33.

Chiron G., Morales F.A., 2010 – Conspectus neotropicus mesoamericanus Le genre Chysis Lindley (Orchidaceae). Richardiana, X(4) : 161- 192.

Chiron G., Sanson N., 2010 – Deux nouvelles espèces de Pleurothallidinae (Orchidaceae) d’Espirito Santo (Brésil). Richardiana, X(3) :152-160.

Duhem B., Trichies G., Ben Schultheis, 2010 - Sistotrema henri-michel sp. nov. Bull. Soc. Mycol. Fr., 126(1) : 1-10.

Lopez E., Devesa J.A., 2010 – Notas taxonomicas sobre el genero Centaurea (Asteraceae) en la Peninsula Iberica ; C. Paniculata, C. Hanryi y C. Diffusa. Anales del Jardin Botanico de Madrid, 67 (2) : 113-126.

Rivoire B., Carbonnel D., 2012 – Le bois Bouchat : une forêt caractéristique des contreforts est des monts du lyonnais. Indications sur sa fonge. I- Les polypores. Bull. Soc. Linnéenne Lyon, 81(3-4) : 55-68.

Rivoire B., 2010 - Les Polypores, une richesse fongique pour la biodiversité rhonalpine. Bull. Soc. Linn. Lyon, H.S. n° 2 : 91-94.


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  • 2010